Miyakogusa Predicted Gene

chr3.CM0135.290.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0135.290.nd - phase: 0 /partial
         (306 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC202373_9.4 Brix chr04_pseudomolecule_IMGAG_V2 35402955-35...   524   e-149
IMGA|AC146777_24.5 Brix chr04_pseudomolecule_IMGAG_V2 32013700-3...   447   e-126

>IMGA|AC202373_9.4 Brix chr04_pseudomolecule_IMGAG_V2
           35402955-35408037 E EGN_Mt071002 20080227
          Length = 369

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/298 (85%), Positives = 275/298 (92%), Gaps = 14/298 (4%)

Query: 10  GFRRPVVIK-NHKQPQQQPTVDPITGKKIPKSFVFSRGKLPAPLKQLQMDLRKLMLPYTA 68
           GFRRPV+IK N+KQP+ QP++DPITGKKIPKSFVFSRGKLP PLKQLQMDLRKLMLPYTA
Sbjct: 7   GFRRPVIIKKNNKQPEAQPSIDPITGKKIPKSFVFSRGKLPVPLKQLQMDLRKLMLPYTA 66

Query: 69  LNLKEKKRNNLRDFLNVAGPMGVTHFLILSKTATSPYLKVATTPQGPTLSFKIHEYALAA 128
           L+LKEKKRNNLRDFLNVAGPMGVTHFLILSKT TSPYL+             I EYALAA
Sbjct: 67  LSLKEKKRNNLRDFLNVAGPMGVTHFLILSKTKTSPYLR-------------IQEYALAA 113

Query: 129 DVVRSQLHPRCPKDLFKNSALIVLSGFVSSDLHLKLTTNMFQNIFPTIDVKTVKLTSCQR 188
           D+ +SQLHPRCPKDLFKNSALIVLSGFVS DL L+LTTNMFQNIFPTIDVKTVKL+SCQR
Sbjct: 114 DIAQSQLHPRCPKDLFKNSALIVLSGFVSGDLPLRLTTNMFQNIFPTIDVKTVKLSSCQR 173

Query: 189 IVLLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKLVQSHQVPDLRNLHDVSDFVTKAGYGS 248
           IVLLNYNK+TKLIDFRHYSIRLQP+GVS+R+RKLVQSHQVPDLRNL DVSDFVTKAGYGS
Sbjct: 174 IVLLNYNKETKLIDFRHYSIRLQPIGVSKRIRKLVQSHQVPDLRNLQDVSDFVTKAGYGS 233

Query: 249 ESEADEEAATVTLSSDIGRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSE 306
           ESEAD+EAATVTLSS++GRVNRASTKSAV+LQEIGPRMTLQLVRIEKGLCSGEVLF E
Sbjct: 234 ESEADDEAATVTLSSNLGRVNRASTKSAVRLQEIGPRMTLQLVRIEKGLCSGEVLFDE 291


>IMGA|AC146777_24.5 Brix chr04_pseudomolecule_IMGAG_V2
           32013700-32016687 E EGN_Mt071002 20080227
          Length = 297

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/236 (90%), Positives = 229/236 (97%)

Query: 71  LKEKKRNNLRDFLNVAGPMGVTHFLILSKTATSPYLKVATTPQGPTLSFKIHEYALAADV 130
           L+EKKRNNLRDFLNVAGPMGVTHFLILSKT TSPYL+VATTPQGPTL+FKI EYALAAD+
Sbjct: 5   LQEKKRNNLRDFLNVAGPMGVTHFLILSKTKTSPYLRVATTPQGPTLTFKIQEYALAADI 64

Query: 131 VRSQLHPRCPKDLFKNSALIVLSGFVSSDLHLKLTTNMFQNIFPTIDVKTVKLTSCQRIV 190
            +SQLHPRCPKDLFKNSALIVLSGFVS DL L+LTTNMFQNIFPTIDVKTVKL+SCQRIV
Sbjct: 65  AQSQLHPRCPKDLFKNSALIVLSGFVSGDLPLRLTTNMFQNIFPTIDVKTVKLSSCQRIV 124

Query: 191 LLNYNKDTKLIDFRHYSIRLQPVGVSRRLRKLVQSHQVPDLRNLHDVSDFVTKAGYGSES 250
           LLNYNK+TKLIDFRHYSIRLQP+GVS+R+RKLVQSHQVPDLRNL DVSDFVTKAGYGSES
Sbjct: 125 LLNYNKETKLIDFRHYSIRLQPIGVSKRIRKLVQSHQVPDLRNLQDVSDFVTKAGYGSES 184

Query: 251 EADEEAATVTLSSDIGRVNRASTKSAVKLQEIGPRMTLQLVRIEKGLCSGEVLFSE 306
           EAD+EAATVTLSS++GRVNRASTKSAV+LQEIGPRMTLQLVRIEKGLCSGEVLF E
Sbjct: 185 EADDEAATVTLSSNLGRVNRASTKSAVRLQEIGPRMTLQLVRIEKGLCSGEVLFDE 240