Miyakogusa Predicted Gene
- chr3.CM0127.630.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr3.CM0127.630.nc - phase: 0
(898 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU013532_30.4 DNA breaking-rejoining enzyme, catalytic core... 872 0.0
IMGA|CU457782_26.3 DNA breaking-rejoining enzyme, catalytic core... 872 0.0
IMGA|CU457782_1.3 DNA breaking-rejoining enzyme, catalytic core ... 714 0.0
>IMGA|CU013532_30.4 DNA breaking-rejoining enzyme, catalytic core
chr03_pseudomolecule_IMGAG_V2 13910887-13919779 H
EGN_Mt071002 20080227
Length = 839
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/555 (75%), Positives = 455/555 (81%), Gaps = 3/555 (0%)
Query: 345 LLPSSGDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTD 404
L SSGDGQKKWTTLVHNGVIFPPPY+PH VK+LYK KPV LT +QEEVATM+AV+ D
Sbjct: 287 LQSSSGDGQKKWTTLVHNGVIFPPPYKPHGVKVLYKAKPVTLTPEQEEVATMFAVV-DAK 345
Query: 405 YMLKDKFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXX 464
YM + FK+NFWNDWRKLLG+NHVIQNLKDCDFTPIYDWC
Sbjct: 346 YMQNEIFKDNFWNDWRKLLGENHVIQNLKDCDFTPIYDWCQVEKDKKKQMSSEEKKALKE 405
Query: 465 XXXXXXXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKD 524
WAIVDGVKEKVGNFRVEPPGLF GRGEHPK+GK+KRRI PSD+ INIGK
Sbjct: 406 QKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFIGRGEHPKIGKVKRRIHPSDVSINIGKY 465
Query: 525 APIPECPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKA 584
PIPECPIPGE WKEI+H +T WLA W DPINP K+V L SSSLKGQSDKEKYEKA
Sbjct: 466 TPIPECPIPGESWKEIKHKDTRIWLAKWRDPINPNKSKHVSLDPSSSLKGQSDKEKYEKA 525
Query: 585 RMLKDYIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 644
RMLK YIGNIRAAYT+ FTSKDITKQQIAVATY IDKLALRAGNEKDD+EADTVGCCTLK
Sbjct: 526 RMLKSYIGNIRAAYTEGFTSKDITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLK 585
Query: 645 VENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKL 704
+ENVT + NKLKF+FLGKDSIKYENTVEVELPVYNAILKFQKDK GDDLFD LDTSKL
Sbjct: 586 IENVTAQGHNKLKFDFLGKDSIKYENTVEVELPVYNAILKFQKDKHPGDDLFDKLDTSKL 645
Query: 705 NAHLKELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQR 764
NAHLKELMP LTAKVFRTFNAS TLDDMLNK+TKDGDV EK VYQHANKQVAIICNHQR
Sbjct: 646 NAHLKELMPNLTAKVFRTFNASFTLDDMLNKETKDGDVAEKKDVYQHANKQVAIICNHQR 705
Query: 765 SVSKSHDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKK 824
SVSK+H Q+++LNEK+ ELQA L+EL+ DL RAR NL+ EA+EKK
Sbjct: 706 SVSKNHSAQISKLNEKIVELQASLRELKIDLKRAR-KENSPLTSSDGKKRNLNPEAIEKK 764
Query: 825 ISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF-NKSLL 883
I+QT+AKIEKMQRDM TKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIF K+LL
Sbjct: 765 ITQTSAKIEKMQRDMHTKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFTGKTLL 824
Query: 884 AKFTWAMDVDPDFRF 898
KF WAMDVDP+FRF
Sbjct: 825 QKFAWAMDVDPNFRF 839
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 133/272 (48%), Gaps = 58/272 (21%)
Query: 1 MAVEASDKPNLPDNFDDEPLVFKRYTSKKS-QLNSEVRKSTSQSHDGPSYRQNSDGPSSN 59
MAVEASD + FK ++ KS QL SE+RKSTS SHD SY+ SD SSN
Sbjct: 1 MAVEASDGS----------VTFKSSSASKSNQLYSEMRKSTSHSHDELSYKNTSDVSSSN 50
Query: 60 GKTSSMQKGNIVPSAKVTPPVKASVGISKASNSLGNASSAKLPLANSKLVSSRDKPKTLS 119
G+TSS Q G +VPSAK + V++SVG +KAS S L + R+K
Sbjct: 51 GQTSSSQNGKVVPSAKAS-AVESSVGNTKAS--------------TSNLKTQRNKD---- 91
Query: 120 EQKMSINVKEEKNIKNCSKXXXXXXXXXHK--PLSA-RLKVNSHHDNKTSPXXXXXXXXX 176
INV EE N K PLSA ++K+N+ + K +P
Sbjct: 92 ----LINVNEENNSTKHLKEDRCEDSEEEDSIPLSAIKMKMNNGNVKKATP--DVLKKSY 145
Query: 177 XXXXXXXIPLSVKINRNSNLATSSSNYDDSDKKPISKVQKERQNGSGITIKQERASTLPV 236
IPLS + +N+NL S N+DDS+ KQE S L V
Sbjct: 146 EDSDDDDIPLSARFPKNTNLGKYSCNFDDSN-------------------KQEMTSMLSV 186
Query: 237 KRPIDNSNSLNSSMKKPKVSDSAASTKAKQVS 268
KRP+D +SL+SS KK K+SD A+S AKQ +
Sbjct: 187 KRPLDKIDSLHSSGKKSKLSDPASSINAKQTT 218
>IMGA|CU457782_26.3 DNA breaking-rejoining enzyme, catalytic core
chr03_pseudomolecule_IMGAG_V2 13857333-13848441 H
EGN_Mt071002 20080227
Length = 839
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/555 (75%), Positives = 455/555 (81%), Gaps = 3/555 (0%)
Query: 345 LLPSSGDGQKKWTTLVHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTD 404
L SSGDGQKKWTTLVHNGVIFPPPY+PH VK+LYK KPV LT +QEEVATM+AV+ D
Sbjct: 287 LQSSSGDGQKKWTTLVHNGVIFPPPYKPHGVKVLYKAKPVTLTPEQEEVATMFAVV-DAK 345
Query: 405 YMLKDKFKENFWNDWRKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXX 464
YM + FK+NFWNDWRKLLG+NHVIQNLKDCDFTPIYDWC
Sbjct: 346 YMQNEIFKDNFWNDWRKLLGENHVIQNLKDCDFTPIYDWCQVEKDKKKQMSSEEKKALKE 405
Query: 465 XXXXXXXXXXWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKD 524
WAIVDGVKEKVGNFRVEPPGLF GRGEHPK+GK+KRRI PSD+ INIGK
Sbjct: 406 QKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFIGRGEHPKIGKVKRRIHPSDVSINIGKY 465
Query: 525 APIPECPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKA 584
PIPECPIPGE WKEI+H +T WLA W DPINP K+V L SSSLKGQSDKEKYEKA
Sbjct: 466 TPIPECPIPGESWKEIKHKDTRIWLAKWRDPINPNKSKHVSLDPSSSLKGQSDKEKYEKA 525
Query: 585 RMLKDYIGNIRAAYTKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLK 644
RMLK YIGNIRAAYT+ FTSKDITKQQIAVATY IDKLALRAGNEKDD+EADTVGCCTLK
Sbjct: 526 RMLKSYIGNIRAAYTEGFTSKDITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLK 585
Query: 645 VENVTREAPNKLKFNFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKL 704
+ENVT + NKLKF+FLGKDSIKYENTVEVELPVYNAILKFQKDK GDDLFD LDTSKL
Sbjct: 586 IENVTAQGHNKLKFDFLGKDSIKYENTVEVELPVYNAILKFQKDKHPGDDLFDKLDTSKL 645
Query: 705 NAHLKELMPGLTAKVFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQR 764
NAHLKELMP LTAKVFRTFNAS TLDDMLNK+TKDGDV EK VYQHANKQVAIICNHQR
Sbjct: 646 NAHLKELMPNLTAKVFRTFNASFTLDDMLNKETKDGDVAEKKDVYQHANKQVAIICNHQR 705
Query: 765 SVSKSHDTQMTRLNEKLDELQAVLKELRTDLDRARXXXXXXXXXXXXXXXNLSSEALEKK 824
SVSK+H Q+++LNEK+ ELQA L+EL+ DL RAR NL+ EA+EKK
Sbjct: 706 SVSKNHSAQISKLNEKIVELQASLRELKIDLKRAR-KENSPLTSSDGKKRNLNPEAIEKK 764
Query: 825 ISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF-NKSLL 883
I+QT+AKIEKMQRDM TKEDLKTVALGTSKINYLDPRI+VAWCKRHEVPIEKIF K+LL
Sbjct: 765 ITQTSAKIEKMQRDMHTKEDLKTVALGTSKINYLDPRISVAWCKRHEVPIEKIFTGKTLL 824
Query: 884 AKFTWAMDVDPDFRF 898
KF WAMDVDP+FRF
Sbjct: 825 QKFAWAMDVDPNFRF 839
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 133/272 (48%), Gaps = 58/272 (21%)
Query: 1 MAVEASDKPNLPDNFDDEPLVFKRYTSKKS-QLNSEVRKSTSQSHDGPSYRQNSDGPSSN 59
MAVEASD + FK ++ KS QL SE+RKSTS SHD SY+ SD SSN
Sbjct: 1 MAVEASDGS----------VTFKSSSASKSNQLYSEMRKSTSHSHDELSYKNTSDVSSSN 50
Query: 60 GKTSSMQKGNIVPSAKVTPPVKASVGISKASNSLGNASSAKLPLANSKLVSSRDKPKTLS 119
G+TSS Q G +VPSAK + V++SVG +KAS S L + R+K
Sbjct: 51 GQTSSSQNGKVVPSAKAS-AVESSVGNTKAS--------------TSNLKTQRNKD---- 91
Query: 120 EQKMSINVKEEKNIKNCSKXXXXXXXXXHK--PLSA-RLKVNSHHDNKTSPXXXXXXXXX 176
INV EE N K PLSA ++K+N+ + K +P
Sbjct: 92 ----LINVNEENNSTKHLKEDRCEDSEEEDSIPLSAIKMKMNNGNVKKATP--DVLKKSY 145
Query: 177 XXXXXXXIPLSVKINRNSNLATSSSNYDDSDKKPISKVQKERQNGSGITIKQERASTLPV 236
IPLS + +N+NL S N+DDS+ KQE S L V
Sbjct: 146 EDSDDDDIPLSARFPKNTNLGKYSCNFDDSN-------------------KQEMTSMLSV 186
Query: 237 KRPIDNSNSLNSSMKKPKVSDSAASTKAKQVS 268
KRP+D +SL+SS KK K+SD A+S AKQ +
Sbjct: 187 KRPLDKIDSLHSSGKKSKLSDPASSINAKQTT 218
>IMGA|CU457782_1.3 DNA breaking-rejoining enzyme, catalytic core
chr03_pseudomolecule_IMGAG_V2 13744032-13749359 H
EGN_Mt071002 20080227
Length = 721
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/790 (53%), Positives = 491/790 (62%), Gaps = 77/790 (9%)
Query: 1 MAVEASDKPNLPDNFDDEPLVFKRYTSKKSQLNSEVRKSTSQSHDGPSYRQNSDGPSSNG 60
MAVEAS K N F +S+ +QL+S RKSTS SHDG SY+ S+ SSN
Sbjct: 1 MAVEASGKLNTSHKF--------IRSSESNQLHSNTRKSTSHSHDGRSYKNTSNVLSSND 52
Query: 61 KTSSMQKGNIVPSAKVTPPVKASVGISKASNSLGNASSAKLPLANSKLVSSRDKPKTLSE 120
++SS Q G ++ SA + V++SVGIS AS S N K + K L E
Sbjct: 53 QSSSSQNGKVIRSA-MASAVESSVGISNASTS------------NLKTYTRSPSTKHLKE 99
Query: 121 QKMSINVKEEKNIKNCSKXXXXXXXXXHKPLSA-RLKVNSHHDNKTSPXXXXXXXXXXXX 179
+ + EE ++ PLS R+K+N+ + K +P
Sbjct: 100 DRREDSADEEDSM----------------PLSVIRMKMNNANVKKATP---NVLKKSYED 140
Query: 180 XXXXIPLSVKINRNSNLATSSSNYDDSDKKPISKVQKERQNGSGITIKQERASTLPVKRP 239
IPLS ++++ +NYDDSD KQE+ASTL VKRP
Sbjct: 141 FDDDIPLSARLSQ-------ITNYDDSD-------------------KQEKASTLSVKRP 174
Query: 240 IDNSNSLNSSMKKPKVSDSAASTKAKQVSGKSQPKIEXXXXXXXXVPISQRIKNXXXXXX 299
+D SL+SS KK K+S A+S AKQ + K K E +PIS+R+
Sbjct: 175 LDEFESLHSSGKKSKLSHPASSINAKQTTMKCDVKAE-EEEEDDDIPISRRMNKLANKSS 233
Query: 300 XXXXXXXXXXXXXXXXXXGTTXXXXXXXXXXXXXXXXXXXXXXXXLLPSSGDGQKKWTTL 359
L S +K T +
Sbjct: 234 YSKKLTNDTKVNKVD-----APSFKKKARLKKSGNKSKHVKSTKHQLSSGDGQKKWTTLV 288
Query: 360 VHNGVIFPPPYQPHRVKMLYKGKPVDLTADQEEVATMYAVMRDTDYMLKDKFKENFWNDW 419
+ + PP Y+PH VK+LYKGKPV LT +QEEVATM+AV DT Y + FK NFWNDW
Sbjct: 289 HNGVIFPPP-YKPHGVKILYKGKPVTLTPEQEEVATMFAVT-DTKYSQNEIFKVNFWNDW 346
Query: 420 RKLLGKNHVIQNLKDCDFTPIYDWCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAIVD 479
RKLLG+NH+IQNLKDCD TPIYDWC WAIVD
Sbjct: 347 RKLLGENHMIQNLKDCDITPIYDWCQIEKDKKKQMSSAEKKALKEEKMKQEEKYMWAIVD 406
Query: 480 GVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIRPSDIVINIGKDAPIPECPIPGERWKE 539
GVKEKVG+FRVEPPGLF GRGEHPK+GK+KRRI P D+ INIGK APIPECPIPGE WK
Sbjct: 407 GVKEKVGSFRVEPPGLFIGRGEHPKIGKVKRRILPHDVTINIGKYAPIPECPIPGESWK- 465
Query: 540 IRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIR-AAY 598
I H++TVTWLA W DPI+PKL KYV+L ASSSLKG+SDKEKYEKARMLK YIGNIR AAY
Sbjct: 466 ITHEDTVTWLAKWCDPIDPKLIKYVWLGASSSLKGKSDKEKYEKARMLKSYIGNIRAAAY 525
Query: 599 TKDFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREAPNKLKF 658
TK F SK ITKQQIAVATY IDKLALRAGNEKDD+EADTVGCCTLKVENVT + NKLKF
Sbjct: 526 TKGFKSKYITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENVTAQGHNKLKF 585
Query: 659 NFLGKDSIKYENTVEVELPVYNAILKFQKDKKGGDDLFDMLDTSKLNAHLKELMPGLTAK 718
FLGKDSIKYENTVEVELPVYNAILKFQKDK GDDLFD LDTSKLNAHLKELMP LTAK
Sbjct: 586 EFLGKDSIKYENTVEVELPVYNAILKFQKDKHPGDDLFDKLDTSKLNAHLKELMPNLTAK 645
Query: 719 VFRTFNASITLDDMLNKDTKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDTQMTRLN 778
VF TFNAS TLDDMLNK+TKDGDV EK+ V++ ANKQVAIICNHQRSVSKSH Q+++LN
Sbjct: 646 VFCTFNASFTLDDMLNKETKDGDVAEKVYVHRQANKQVAIICNHQRSVSKSHSEQISKLN 705
Query: 779 EKLDELQAVL 788
EK+DELQ ++
Sbjct: 706 EKIDELQVIM 715