Miyakogusa Predicted Gene

chr3.CM0112.180.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0112.180.nd - phase: 0 
         (207 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC160096_24.5 Zinc finger, CCHC-type; Cold shock protein ch...   102   1e-22

>IMGA|AC160096_24.5 Zinc finger, CCHC-type; Cold shock protein
          chr08_pseudomolecule_IMGAG_V2 17625033-17625900 E
          EGN_Mt071002 20080227
          Length = 275

 Score =  102 bits (254), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 62/78 (79%)

Query: 1  MSDSRVNGKVKWFNDQKGFGFITPDDGGDDLFVHQSEIKSEGFRCLGEGEDVEFIVASDP 60
          M++ R++G V+WFN+ KGFGFI PDD  +DLFVHQS+I+SEGFR L EG+ VEF +A   
Sbjct: 1  MAEERISGVVQWFNNTKGFGFIKPDDDSEDLFVHQSDIRSEGFRSLSEGDRVEFTIADGD 60

Query: 61 DGRAKAIEVTGPNGQAVQ 78
          +G+ KA++VTGP G+ +Q
Sbjct: 61 NGKTKAVDVTGPKGEPLQ 78