Miyakogusa Predicted Gene

chr3.CM0111.570.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0111.570.nd + phase: 0 
         (109 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC135317_16.4 Seed maturation protein chr01_pseudomolecule_...   128   5e-31
IMGA|AC151598_69.5 Tubby; Cyclin-like F-box; Seed maturation pro...   126   2e-30
IMGA|AC146744_17.4 Seed maturation protein chr03_pseudomolecule_...    63   2e-11

>IMGA|AC135317_16.4 Seed maturation protein
           chr01_pseudomolecule_IMGAG_V2 16656533-16650754 E
           EGN_Mt071002 20080227
          Length = 264

 Score =  128 bits (322), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 85/118 (72%), Gaps = 10/118 (8%)

Query: 1   MSQEQPRR------GEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGG 54
           MSQEQP+R       E+E IKYGDVFNVSGELAS+P+ PRDAA+MQ+ E+Q LGQ QKG 
Sbjct: 1   MSQEQPQRPQAEQFSEQEPIKYGDVFNVSGELASQPIKPRDAALMQATENQALGQTQKGS 60

Query: 55  PAAVMESAAAKNERAGHVNHQAATKFARNQGVYVSQTDNG----VTETLGGQVIDWFF 108
           PA+VM+SAAA N  AG V+H   +  A+NQG+ VS+T  G    +TE++G QV+  F 
Sbjct: 61  PASVMQSAAAVNTAAGLVSHGDISDIAKNQGMSVSKTKVGANRVITESVGSQVVGQFV 118


>IMGA|AC151598_69.5 Tubby; Cyclin-like F-box; Seed maturation
           protein chr02_pseudomolecule_IMGAG_V2 17691546-17682964
           H EGN_Mt071002 20080227
          Length = 684

 Score =  126 bits (316), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 77/103 (74%), Gaps = 4/103 (3%)

Query: 1   MSQEQPRRGEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAVME 60
           +  EQPRR E+E IKYGDVFNVSGEL+S+P+ PRDAA MQSAE +  GQ +K GPA++M 
Sbjct: 487 LRAEQPRRHEQEPIKYGDVFNVSGELSSQPIAPRDAATMQSAEYRTFGQTRKDGPASLMT 546

Query: 61  SAAAKNERAGHVNHQAATKFARNQGVYVSQTDNG----VTETL 99
           SAA KNE AG + H  AT  ARN+GV VS+T +G    +TETL
Sbjct: 547 SAAQKNEDAGFIKHNTATNIARNEGVAVSETYDGGKRVITETL 589



 Score =  123 bits (309), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/98 (59%), Positives = 75/98 (76%)

Query: 3   QEQPRRGEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGPAAVMESA 62
           QE+PRR E+E IKYGD+FNVSG+L+S+P+ PRDAA MQSAED+ L   +K GPA++M SA
Sbjct: 368 QEKPRRPEQEPIKYGDIFNVSGDLSSQPIAPRDAATMQSAEDRTLDHARKDGPASLMTSA 427

Query: 63  AAKNERAGHVNHQAATKFARNQGVYVSQTDNGVTETLG 100
           A KNE AG +++  AT  ARN+GV VS+ +NG    LG
Sbjct: 428 AQKNEDAGFIDNNTATNIARNEGVAVSEINNGGKRVLG 465


>IMGA|AC146744_17.4 Seed maturation protein
           chr03_pseudomolecule_IMGAG_V2 6632507-6634209 E
           EGN_Mt071002 20080227
          Length = 269

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 68/115 (59%), Gaps = 11/115 (9%)

Query: 1   MSQEQPRR-----GEREAIKYGDVFNVSGELASKPVMPRDAAMMQSAEDQVLGQIQKGGP 55
           MS  QP R       +E IKYG+VFNVSG+LAS+ + P+ AA M +AE  VLGQ Q G P
Sbjct: 1   MSHGQPTRLQEEINNQEPIKYGEVFNVSGDLASETISPQAAANMAAAEFNVLGQAQPGSP 60

Query: 56  AAVMESAAAKNERAGH--VNHQAATKFARNQGVYVSQTDNG----VTETLGGQVI 104
           AA M++AA  NE +G   V      +  ++ G+ V++T       VTE + GQ+I
Sbjct: 61  AAAMQAAALINEASGQCLVGRHGIAEMVKDHGIRVTETTAANRRVVTEAVDGQII 115