Miyakogusa Predicted Gene

chr3.CM0047.550.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr3.CM0047.550.nd - phase: 0 /partial
         (550 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CT962509_1.5 Prefoldin chr03_pseudomolecule_IMGAG_V2 166229...   606   e-174

>IMGA|CT962509_1.5 Prefoldin chr03_pseudomolecule_IMGAG_V2
           1662297-1658586 F EGN_Mt071002 20080227
          Length = 575

 Score =  606 bits (1563), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 350/560 (62%), Positives = 398/560 (71%), Gaps = 29/560 (5%)

Query: 1   MDLGTESVEENELNHDGDENGTRDGDSIGDENLGLGFDGNSGVSTDQKEEVVDEGSGDAS 60
           MDLG+ESVEENE+NHD  ENG +  D    E  G  FDGN GV  DQ+  V + GS +A 
Sbjct: 1   MDLGSESVEENEVNHD--ENGIKGCD----EKSGFQFDGNFGVKPDQEGIVAELGSEEAV 54

Query: 61  SSKGTPTKGFGLKKWKRIRRDVVKDPNSSA-ESGKVLLKRGLSGSGNVNLSENQPFSRDV 119
           +SKG P KG GLKKWKRIRR+VV+D NSSA ESGKVL KRGLSGSGNVNLSEN    R V
Sbjct: 55  NSKGAPRKGVGLKKWKRIRRNVVRDHNSSADESGKVL-KRGLSGSGNVNLSENL---RGV 110

Query: 120 KEKNDGSSNTFGNVVFPEGFAGRGSSSDSRYAVGSGFVVGTXXXXXXXXXXXXXTAASEP 179
           KEKNDGSS+ FGNVVF +G A RGSS+DSRYAVGSGFVVGT             TAASEP
Sbjct: 111 KEKNDGSSSAFGNVVFSDGHAIRGSSTDSRYAVGSGFVVGTDSENSEDRSSKSSTAASEP 170

Query: 180 KIRHDKSR-SKNTNSKNVGNTAQRVLQQGKGRIESSKNPGGGAGVRIEKXXXXXXXXXXX 238
           K+RH+K R S+NTNSKN+ N+AQ+V QQGKG IESS  PGGG  V+ EK           
Sbjct: 171 KVRHEKGRGSRNTNSKNLVNSAQKV-QQGKGWIESSAKPGGGGRVKFEKENSISSLDSDS 229

Query: 239 XXXXXXQGVFS-VTSNGKHNGRPFIYDGGNGSEALINEHLTEGVEASYGNENIGEDDDLL 297
                 Q VFS VTSNGKH+G P +YDG N  EA  NEH TE  EA YGNEN GED+DL 
Sbjct: 230 RSNYK-QAVFSTVTSNGKHSGNPHVYDGDNDGEANTNEHFTEEHEAGYGNEN-GEDEDL- 286

Query: 298 PENSVTNLSWGATEEKSVDNQSSNMEDPLIESIRSXXXXXXXXXXXXXKFKETGIEVVSP 357
            ENS  N SW A EEKS +NQS++ EDPLIESIRS             KF+E   EVVSP
Sbjct: 287 QENSAANQSWDAPEEKSENNQSTSAEDPLIESIRSLQAVQEALEEEVQKFREIDTEVVSP 346

Query: 358 DDDLAKCSSASAGTIGVDIGLHNSCVSAHSGAEEIKQTASSSLELQVLNLTQNISSLENK 417
           +DD AKCSSASAG   VD+G H S +S+HS A+E  Q+ASSSLE Q+ +L Q+++ LE+K
Sbjct: 347 EDDSAKCSSASAGITAVDLGFHKSFLSSHSSADETNQSASSSLEFQISSLKQHVNLLESK 406

Query: 418 LKELQGMVALKDSRIVELETALSSGKSPKEESASTIGLXXXXXXXXXXXXXGLFRQKIEA 477
           L ELQG+++ KDSRIVELETALSSGK PKEESA+T+G               LFRQK+EA
Sbjct: 407 LGELQGVLSSKDSRIVELETALSSGKFPKEESANTLGYKEVEYEIED-----LFRQKVEA 461

Query: 478 EIEYLAISKVMQNLKAGKDFQLTLLEEQEKLSENQEQV-------EIKASALKNKAEELE 530
           E+EYLAI+KVMQNLK G D Q TLLEEQEKLSENQ QV       E KAS LKNKAEELE
Sbjct: 462 EVEYLAIAKVMQNLKVGADLQFTLLEEQEKLSENQAQVLNKIIDAESKASVLKNKAEELE 521

Query: 531 KYCGDSLVVEESFVLQKRVC 550
           KYCGDSLV+EESF+LQKRVC
Sbjct: 522 KYCGDSLVIEESFLLQKRVC 541