Miyakogusa Predicted Gene

chr2.LjT16L14.40.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.LjT16L14.40.nc + phase: 0 
         (221 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC138580_39.4 hypothetical protein chr06_pseudomolecule_IMG...   148   1e-36

>IMGA|AC138580_39.4 hypothetical protein
           chr06_pseudomolecule_IMGAG_V2 11937640-11928110 H
           EGN_Mt071002 20080227
          Length = 140

 Score =  148 bits (374), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 96/127 (75%), Gaps = 2/127 (1%)

Query: 96  SLVDSSPASVPLPLRVEPKPKSGIRQQDLLKKVVEIKPKRPRSESKQSTSASSDVSVTNR 155
           SL DSSPASVPLPLRVEPKPKSGIRQQDLLKKVVEIKPKRPRSE  +   A SD S+TNR
Sbjct: 15  SLADSSPASVPLPLRVEPKPKSGIRQQDLLKKVVEIKPKRPRSEGNKPMQAPSDASITNR 74

Query: 156 KPDHGRLKETGQSLSGVKKVEEQSLSGSTKVEDLS-SGSHDADAKPKINNSXXXXXXXAY 214
           + D   LK+  Q LSG +KVEE+SLSG  KVE+   S  H+++ KPK++NS       AY
Sbjct: 75  QHDRDNLKDNKQCLSG-QKVEERSLSGLKKVEEHPVSELHESETKPKVDNSAGGLLGLAY 133

Query: 215 ASSDDDE 221
           ASSDDDE
Sbjct: 134 ASSDDDE 140