Miyakogusa Predicted Gene

chr2.CM0904.170.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0904.170.nd - phase: 0 /pseudo/partial
         (514 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AY515253_16.4 RNA-metabolising metallo-beta-lactamase chr02...    46   4e-05

>IMGA|AY515253_16.4 RNA-metabolising metallo-beta-lactamase
           chr02_pseudomolecule_IMGAG_V2 484801-482598 E
           EGN_Mt071002 20080227
          Length = 553

 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 10/121 (8%)

Query: 200 YWAE--ENLVYPIYFLSYVSSSTIDYVKSFLEWMSDTIAKSFEQTRENIFLLKYITLLVN 257
           YWA   E    PIY+ S ++   +   +++   M+D I    +  + N F  K+I+ L  
Sbjct: 129 YWANHPELQNIPIYYASPLAKKCLTVYETYTLSMNDRI----QNAKSNPFAFKHISAL-- 182

Query: 258 KTELDNVPD-GPKVVLASMASLEAGFSHDIFVEWGSDVKNLVLFTEKGQFATLARMLQAD 316
            + +D   D GP VV+AS   L++G S  +F  W SD KN  +        TLA+ +  +
Sbjct: 183 -SSIDIFKDVGPSVVMASPGGLQSGLSRQLFDMWCSDKKNSCVIPGYVVEGTLAKTILNE 241

Query: 317 P 317
           P
Sbjct: 242 P 242