Miyakogusa Predicted Gene

chr2.CM0803.490.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0803.490.nc - phase: 0 
         (371 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC145449_37.4 Endonuclease/exonuclease/phosphatase chr04_ps...    98   6e-21
IMGA|AC144617_22.5 Endonuclease/exonuclease/phosphatase chr01_ps...    62   5e-10

>IMGA|AC145449_37.4 Endonuclease/exonuclease/phosphatase
           chr04_pseudomolecule_IMGAG_V2 37302544-37297750 H
           EGN_Mt071002 20080227
          Length = 403

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 159/399 (39%), Gaps = 111/399 (27%)

Query: 17  VEAADIHSRTKPDGFRFSLVSYNILA--QVYVKSAFFPYSPPASLKWKHRSNSILEVLKG 74
           VEA D  S   P+  RF++ SYNILA       +  +   P   + W  R   + E L  
Sbjct: 43  VEAFD-QSLASPE--RFTVASYNILADRNASQHTDLYVNVPSRYINWNRRQKILSEELFE 99

Query: 75  LGADFFCLQEVDEFDKFYKGSMQALGYSSIYMKRNGQKRDGCGLFYKHDRAELVLEEKIE 134
              D  CLQEVD + +     ++A GY+  Y +R G   DGC +F+K D+  L+  E I+
Sbjct: 100 WNPDIICLQEVDMYVELSNILVKA-GYAGSYKRRTGDTSDGCAMFWKADKFRLLDGESIQ 158

Query: 135 YNDLVKSIQDGSSSDNDEPSNVQTVQPDKRKNVPPKNGPKSGKEDRGDPNDPRVRLKRDC 194
           Y                             KN+  +                      D 
Sbjct: 159 Y-----------------------------KNIGLR----------------------DN 167

Query: 195 VGILAAFKFKDPSHPVVIVANTHLYWDPEWADVKLAQANYLLSRLAQFKTLVSERYECMP 254
           V  L  F+        ++V N H+ ++P   +VKL Q  +L S+       +SE++   P
Sbjct: 168 VAQLLVFEMSGSDSRRLLVGNIHVLYNPNRGEVKLGQIRFLSSKAQS----LSEKWGNAP 223

Query: 255 EVIVAGDFNSTP--GDKVY-QCLISGNPS--------------------SGLL------- 284
            VI+AGDFNSTP    K+Y +  +SG                        GLL       
Sbjct: 224 -VILAGDFNSTPELNIKLYDRKQLSGQKRCRPAQVLGEKKETVGPFSSLDGLLDFWTDEE 282

Query: 285 -------PDC-IEKAPIPLCSAY------ASTR---GEPPFTNYTPGFTGTLDHILFCPS 327
                   +C +   P+ L S+Y      ASTR   GEP  T+Y   F GT+D++ +  S
Sbjct: 283 VKTATGDSECHLAVHPLKLNSSYATVNGSASTRGLNGEPLATSYHSKFLGTVDYLWY--S 340

Query: 328 DHIKPISYLELPDSDATDIAGGLPNFSHPSDHLPIGAEF 366
           + I P   L+          GGLP     SDHL + +EF
Sbjct: 341 EGIVPTRVLDTVSISDLLREGGLPCKKVGSDHLALLSEF 379


>IMGA|AC144617_22.5 Endonuclease/exonuclease/phosphatase
           chr01_pseudomolecule_IMGAG_V2 3434673-3444796 E
           EGN_Mt071002 20080227
          Length = 864

 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 32  RFSLVSYNILAQVYVKSAF---FPYSPPASLKWKHRSNSILEVLKGLGADFFCLQEVDEF 88
           RF ++SYNILA       +   + + P   L W+ R + I+  L    AD  CLQEVD F
Sbjct: 174 RFKVLSYNILADYLAMDHWRKLYYHIPSYMLNWQWRKSKIVLELGLWSADIMCLQEVDRF 233

Query: 89  DKFYKGSMQALGYSSIYMKRNGQKRDGCGLFYK 121
            +  +  ++  GY  I+  R G   DGC +F++
Sbjct: 234 HEL-EEDLKFKGYRGIWKMRTGNPVDGCAIFWR 265