Miyakogusa Predicted Gene

chr2.CM0405.50.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0405.50.nd + phase: 0 /pseudo/partial
         (611 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CR962128_25.4 Adaptin, N-terminal chr05_pseudomolecule_IMGA...   649   0.0  

>IMGA|CR962128_25.4 Adaptin, N-terminal chr05_pseudomolecule_IMGAG_V2
            28262257-28251984 E EGN_Mt071002 20080227
          Length = 1126

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/479 (70%), Positives = 372/479 (77%), Gaps = 2/479 (0%)

Query: 130  VLLYIKGEDSWTLRKIWSYVIELAECDQNYDIRDRSRVLKKLFSSSLEFQNAEENSKSQK 189
            V L IKGEDSWTLRKIW+YVIELAE D NYDIRDRSR LKKL SS+LE QN EE +   +
Sbjct: 592  VSLCIKGEDSWTLRKIWTYVIELAERDLNYDIRDRSRFLKKLLSSNLESQNVEEENSESR 651

Query: 190  RDQSCVLSECIFGGQTKSVTVPSEPINYRFYLPGSLSQLVFHAAPGYEPLPKPCSLPYID 249
            +DQS VL+ECIFGGQTK+VTVPSEPIN RFYLPGSLSQLVFHAAPGYEPLPKPCSLPYID
Sbjct: 652  KDQSSVLAECIFGGQTKTVTVPSEPINDRFYLPGSLSQLVFHAAPGYEPLPKPCSLPYID 711

Query: 250  LDQYDGAAXXXXXXXXXXXXXXXXXXXNAXXXXXXXXXXXXXXXXXXXXTMPGNGGNNNA 309
              QYDGA                    NA                    T+ G+ G+NN 
Sbjct: 712  --QYDGAVNSDSEEVDDPGSSGSSDDENASDYSSEQSISGSSEGSGSNETVSGDEGDNND 769

Query: 310  DLLIQISDPGNVLENQNGGAHSGTSGLRDLMSTKSLESWLDEAPGSSKSREVEHSRVQRS 369
            D LIQIS+  NV ENQNGG HSG+SG  DLMSTKSLESWLDE   SSK  E E S+V++S
Sbjct: 770  DPLIQISETSNVNENQNGGDHSGSSGFNDLMSTKSLESWLDEPSKSSKGSETEQSQVRKS 829

Query: 370  SARITISNIGSRVKPKCYILLDPANGNGLKVNYSFLSETPSISSHLVCLELLFENCSLEP 429
            SARITI +IGSRVKPKCY LLDPANG GL VNYSF SET SISSHLVCLE+LFENCSLEP
Sbjct: 830  SARITIGDIGSRVKPKCYTLLDPANGKGLMVNYSFSSETSSISSHLVCLEVLFENCSLEP 889

Query: 430  MLDIVLIDEXXXXXXXXXXXXXPATENTLKFNIDKPAVVSMEDILSLEPGQIAKRTLLAR 489
            M DIVL+DE              A ENTLK ++DKPA+VSME I SLEP Q AKRTLL R
Sbjct: 890  MFDIVLLDEDSSKSADSTDQISQAAENTLKSHVDKPALVSMEAISSLEPSQKAKRTLLVR 949

Query: 490  FHHHLLPLKLSLFCNDNRFPVKLRPDIGYFVKPLPISNEAFRDKESRLPGMFEYVRSCTF 549
            FHHHLLPLKL+LFCNDN+FPVKLRPDIGYFVKPLPI+ EAF +KES LPGMFEYVRSCTF
Sbjct: 950  FHHHLLPLKLALFCNDNKFPVKLRPDIGYFVKPLPINIEAFIEKESHLPGMFEYVRSCTF 1009

Query: 550  TDHILELNKDNNSLTEDKFLVICETLAIKMLSNANLSIVSVDMPDASNLDDASGLCLRF 608
             DHIL+LNK++NSLTED FLVICE+LA+KMLSNANLS+VSVD+P ASNLDDASGLCLRF
Sbjct: 1010 NDHILKLNKESNSLTEDTFLVICESLALKMLSNANLSLVSVDLPVASNLDDASGLCLRF 1068