Miyakogusa Predicted Gene
- chr2.CM0405.110.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0405.110.nd - phase: 0 /pseudo/partial
(324 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition mot... 182 2e-46
IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition moti... 134 4e-32
IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition mot... 63 1e-10
IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition mot... 60 2e-09
IMGA|AC147364_48.5 RNA-binding region RNP-1 (RNA recognition mot... 57 1e-08
IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition mot... 49 3e-06
IMGA|CT963106_6.5 Rhodopsin-like GPCR superfamily; RNA-binding r... 47 1e-05
IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition mot... 46 2e-05
IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition mot... 46 2e-05
IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition mot... 46 2e-05
IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition mot... 45 4e-05
IMGA|AC134522_50.4 RNA-binding region RNP-1 (RNA recognition mot... 44 6e-05
IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition mot... 44 8e-05
IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition mot... 44 1e-04
IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition mot... 43 2e-04
IMGA|AC136507_44.4 RNA-binding region RNP-1 (RNA recognition mot... 43 2e-04
IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition mot... 42 3e-04
IMGA|AC121245_41.5 RNA-binding region RNP-1 (RNA recognition mot... 42 5e-04
IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition mot... 41 6e-04
IMGA|CT033766_5.5 U2 auxiliary factor small subunit chr05_pseudo... 41 6e-04
>IMGA|CR962128_15.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 28226391-28230385 H
EGN_Mt071002 20080227
Length = 289
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/99 (85%), Positives = 92/99 (92%)
Query: 83 EGNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDAS 142
E N GSLLVRNIPLDCR +E+R PFERFGPVRDVYIPKDYYSG+PRGFAFVQFVD Y+AS
Sbjct: 43 ESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDAYEAS 102
Query: 143 EAQYHMNRQIFAGREITVVVASETRKRPEEMRHRTRSSR 181
EAQYHM+RQIFAGREI+VVVA+ETRKRPEEMRHRT SR
Sbjct: 103 EAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSR 141
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/71 (61%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 231 DYSVSPRRQAEHXXXXXXXXXXXXXXXERDGDHKRRSYSP-PYDNGADQNQGNGYTEKSV 289
DYSVSPRR AE ERD DHKRRSYSP Y N DQNQ NGY EKSV
Sbjct: 198 DYSVSPRRHAERPRSPRSPPRSPPV--ERDADHKRRSYSPLGYGNDVDQNQSNGYAEKSV 255
Query: 290 YKSEADRGQLK 300
YKSEADRG K
Sbjct: 256 YKSEADRGPWK 266
>IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22846699-22850069 E
EGN_Mt071002 20080227
Length = 248
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 59/93 (63%), Positives = 76/93 (81%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
SLLVRN+ DCR +++R PF FGP++D+Y+PKDYY+G+PRGF F+QFVDP DA++A+YH
Sbjct: 42 SLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDPADAADAKYH 101
Query: 148 MNRQIFAGREITVVVASETRKRPEEMRHRTRSS 180
M+ Q+ GREITVV A E RK+P EMR R RSS
Sbjct: 102 MDGQVLLGREITVVFAEENRKKPTEMRVRERSS 134
>IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition
motif); HMG-I and HMG-Y, DNA-binding
chr05_pseudomolecule_IMGAG_V2 23848157-23844573 F
EGN_Mt071002 20080227
Length = 267
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
SLLV NI AD++ F+++G V D++IP+D +GE RGFAFV++ +AS+A
Sbjct: 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDR 76
Query: 148 MNRQIFAGREITVVVA 163
++ ++ GREITV A
Sbjct: 77 LDGRMVDGREITVQFA 92
>IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 16974271-16978271 E
EGN_Mt071002 20080227
Length = 382
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 40/72 (55%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L+VRN+P + +EIR F G V +V+IP+ +G +GFAFV+F DA A +
Sbjct: 284 LIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRKL 343
Query: 149 NRQIFAGREITV 160
N F R I V
Sbjct: 344 NGSKFGSRLIAV 355
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
+L V N+P ++ F GPVR ++ S + RGF +VQF DA++A
Sbjct: 22 TLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQAIEL 81
Query: 148 MNRQIFAGREITV 160
N + R+I V
Sbjct: 82 KNSSLVGDRKIVV 94
>IMGA|AC147364_48.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 28511816-28513959 E
EGN_Mt071002 20080227
Length = 101
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 126 EPRGFAFVQFVDPYDASEAQYHMNRQIFAGREITVVVASETRKRPEEMRHRT 177
EPRGF FV++ DA+EA+ +N I GREI +V A E RK P+EMR T
Sbjct: 9 EPRGFGFVKYRHGEDAAEAKQQLNHTIIGGREIRIVFAEENRKTPQEMRVTT 60
>IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 6339165-6343189 E
EGN_Mt071002 20080227
Length = 522
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 83 EGNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDAS 142
E + G L + I D D +R F+ FG V + I KD +G RGF FV F DP A
Sbjct: 41 EMDPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAE 100
Query: 143 EAQYHMNRQIFAGREI 158
M + + GR +
Sbjct: 101 RVV--MEKHVIDGRTV 114
>IMGA|CT963106_6.5 Rhodopsin-like GPCR superfamily; RNA-binding
region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 24353203-24350247 F
EGN_Mt071002 20080227
Length = 149
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+LV+N+P + ++ F FG + +V + KD + +G AF+Q+ DA A M
Sbjct: 41 ILVKNLPYFTGENALQKKFSNFGKIAEVQMVKDVSTERSKGLAFIQYTCQDDAMLALETM 100
Query: 149 NRQIFAGREITV 160
++Q F GR I+V
Sbjct: 101 DQQSFYGRTISV 112
>IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 36065353-36070155 E
EGN_Mt071002 20080227
Length = 479
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDP 138
+ G L + I D + +R F +G V++ I KD +G RGF FV F+DP
Sbjct: 4 DSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDP 57
>IMGA|CU041253_29.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 34554315-34559382 E
EGN_Mt071002 20080227
Length = 407
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L V N+ + ++R FE FG V V +P D +G +GF F+QF A AQ
Sbjct: 139 LYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQSLN 198
Query: 149 NRQIFAGREITV 160
+ AGR I V
Sbjct: 199 GKLEIAGRTIKV 210
>IMGA|CU062643_11.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 28273303-28271287 H
EGN_Mt071002 20080227
Length = 290
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
LL +N+P +++R FE++G V V + Y RG AFV+ P +ASEA +
Sbjct: 91 LLAQNVPWSSTTEDVRSLFEKYGKVLHVELSM-YNKNRNRGLAFVEMGSPEEASEALNSL 149
Query: 149 NRQIFAGREITV 160
F GR I +
Sbjct: 150 QSYEFDGRIINI 161
>IMGA|AC137522_14.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 33036485-33042576 F
EGN_Mt071002 20080227
Length = 567
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L V N+ + +R FE FG + V +P D +G +GF FVQF A AQ
Sbjct: 305 LYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAAQSLN 364
Query: 149 NRQIFAGREITV 160
+ AGR I V
Sbjct: 365 GKLEIAGRTIKV 376
>IMGA|AC134522_50.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 20741104-20734809 E
EGN_Mt071002 20080227
Length = 316
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDV--YIPKDYYSGEPRGFAFVQFVDPYDASEAQ 145
+L V N+P D R E+ F ++GP+ D+ IP +P G+AFV+F D DA +A
Sbjct: 39 TLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPP-----KPPGYAFVEFEDARDAQDAI 93
Query: 146 YHMNRQIFAGREITVVVA 163
Y+ + F G + V +A
Sbjct: 94 YYRDGYDFDGYRLLVELA 111
>IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22195567-22197506 E
EGN_Mt071002 20080227
Length = 352
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 87 GSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVD 137
G + + + D +E FER+G + D I KD ++G PRGF F+ + D
Sbjct: 18 GKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYAD 68
>IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19485092-19483974 E
EGN_Mt071002 20080227
Length = 190
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 106 PFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREITV 160
F +FG + D + D +G RGF FV F + +A MN Q GR ITV
Sbjct: 27 AFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMNGQDIDGRNITV 81
>IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 6167334-6172171 E
EGN_Mt071002 20080227
Length = 399
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVD 137
+ V +P + ++++R F RFG + DVYIP+D RGF FV F D
Sbjct: 229 IFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFAD 277
>IMGA|AC136507_44.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 32243634-32245254 E
EGN_Mt071002 20080227
Length = 126
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
L VRN+P + ++E+ F ++G +R + I + + RG AFV + D YDA A H+
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTN---KDTRGTAFVVYEDIYDAKTAVDHL 77
Query: 149 NRQIFAGREITVV 161
+ A R + V+
Sbjct: 78 SGFNVANRYLIVL 90
>IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 39131449-39132842 F
EGN_Mt071002 20080227
Length = 292
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 85 NQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEA 144
++ S+ V N+ D R ++ F FG V VY+ D +G RGF FV FV DA A
Sbjct: 209 DENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRA 268
Query: 145 QYHMN 149
+N
Sbjct: 269 INKLN 273
>IMGA|AC121245_41.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 25922233-25916898 F
EGN_Mt071002 20080227
Length = 199
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 88 SLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYH 147
S+ V N+ C ++++ F+ G V V I D + G+P+G+A+V+FV+ EA
Sbjct: 69 SIFVGNVDYACTPEDVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFVEVEAVQEA-LL 126
Query: 148 MNRQIFAGREITVV 161
+N GR++ V
Sbjct: 127 LNESELHGRQLKVT 140
>IMGA|AC139882_12.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 15467244-15472639 E
EGN_Mt071002 20080227
Length = 379
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 107 FERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREITVVVASET 166
F + GPV +VY+PKD + + +G+ FV+F DA A +N G+ I V AS+
Sbjct: 45 FVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104
Query: 167 RK 168
+K
Sbjct: 105 KK 106
>IMGA|CT033766_5.5 U2 auxiliary factor small subunit
chr05_pseudomolecule_IMGAG_V2 23709374-23707315 E
EGN_Mt071002 20080227
Length = 161
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 89 LLVRNIPLDCRADEIRVPFERFGPVRDVYIPKDYYSGEPRGFAFVQFVDPYDASEAQYHM 148
+ V IP D ++ F ++G V D+ + +D +G+ +GFAF+ + D + A ++
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 149 NRQIFAGREITV 160
N +GR I V
Sbjct: 98 NGAQVSGRIIRV 109