Miyakogusa Predicted Gene

chr2.CM0323.80.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0323.80.nc + phase: 0 
         (442 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU459034_22.3 Prefoldin chr05_pseudomolecule_IMGAG_V2 68193...   493   e-140

>IMGA|CU459034_22.3 Prefoldin chr05_pseudomolecule_IMGAG_V2
           6819369-6823076 E EGN_Mt071002 20080227
          Length = 455

 Score =  493 bits (1270), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/467 (61%), Positives = 327/467 (70%), Gaps = 37/467 (7%)

Query: 1   MVEEAP-ASETSVSMA-PSEEAVAVDGTLNPSEHGKSEITNGATVDSAAIGGAESASNAE 58
           MVEE P ASETSV+M  P+E    VDGTLN  +       NG TV+++    A SA  + 
Sbjct: 1   MVEETPTASETSVTMPQPTEPVTVVDGTLNLDK-------NGTTVNASVESAATSAPASS 53

Query: 59  TSGKNSLELAVELMDKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYGC 118
           T G+ SL+LA ELM+KG KAMKE+DFGEAA+N+SRALEIRVA+YGELAPECV+TYYKYGC
Sbjct: 54  TEGQKSLDLANELMEKGNKAMKENDFGEAADNYSRALEIRVAHYGELAPECVHTYYKYGC 113

Query: 119 ALLYKAQEEADPLGDVPKKQEGSQHGSSKDESVKSTIXXXXXXXXXXXXXXXXQDIASND 178
           ALLYKAQEEADPLG VPKKQEGS HGS KDE VK  +                QD+ SN+
Sbjct: 114 ALLYKAQEEADPLGAVPKKQEGSPHGSDKDEPVKGAV--NAESSTASFASNVEQDVTSNN 171

Query: 179 QESAVDDESTKNYQXXXXXXXXXXXXXXXXXXXXXXXAWKMLDIARAIVEKQCVNTIEHV 238
           QES VD+ S KN Q                       AWKMLD+ARAIVEKQ V+T+E V
Sbjct: 172 QESEVDNVSGKNDQEDDEDSDTEELAEGDEDESDLDLAWKMLDVARAIVEKQSVHTMEQV 231

Query: 239 DILSTLAEISLEREEFENSLSDYQKALSILEQLVD--------------------SKPEE 278
           DILSTLA+++LERE+FE SLSDYQKALSILEQLV+                    SKPEE
Sbjct: 232 DILSTLADVALEREDFETSLSDYQKALSILEQLVEPDDRNIADINFRICLCLEVSSKPEE 291

Query: 279 AIAYCEKAASVCKARLDRLTNEVK-SITPASEAKNKSIEDKQAEIETLTGLSSDLENKLE 337
           A+AY EKA SVCKAR+DRLTNEVK      S   N SI DKQAEIE L GLSS+LE KLE
Sbjct: 292 AVAYLEKATSVCKARIDRLTNEVKSFSESTSSETNNSIADKQAEIEILAGLSSELEKKLE 351

Query: 338 DLQLLVSNPKSTLSELLEKVAAKAGGGKESIPAKVSSSQLATANSSGGFDSPTISTAHSN 397
           DLQ L++NPKS L+E+L   +AKAG GKE   A+VSSSQLAT NSSG FDSPTISTAH+N
Sbjct: 352 DLQQLIANPKSILAEIL--ASAKAGSGKEPSLARVSSSQLATENSSGSFDSPTISTAHTN 409

Query: 398 GSAAGVTHLGVVGRGVKRTS--LAPEASAPKKPALESTEGKGDSGSA 442
           GS AGVTHLGVVGRGVKR+S     EAS  KKPALE+TE KGD G+A
Sbjct: 410 GS-AGVTHLGVVGRGVKRSSNTSTTEASISKKPALETTEEKGDGGNA 455