Miyakogusa Predicted Gene

chr2.CM0304.430.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0304.430.nc + phase: 0 
         (720 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU326392_8.3 Ubiquitin interacting motif chr05_pseudomolecu...   977   0.0  

>IMGA|CU326392_8.3 Ubiquitin interacting motif
           chr05_pseudomolecule_IMGAG_V2 2931615-2925449 E
           EGN_Mt071002 20080227
          Length = 737

 Score =  977 bits (2526), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/700 (74%), Positives = 568/700 (81%), Gaps = 6/700 (0%)

Query: 24  LKDCLHKTKTVQFLGRTTPIVLQNDNGPCPLLAICXXXXXXXXXX-XSPDIPEVSQEKLL 82
           +KD LHKTK +QFLGRTTPIVLQNDNGPCPLLAIC            S DI EVSQEKLL
Sbjct: 41  IKDFLHKTKIIQFLGRTTPIVLQNDNGPCPLLAICNVLLLRNQLEGLSADIGEVSQEKLL 100

Query: 83  SLVAERLIDSNSNVNNKDEGYVENQQQNIADAIDLLPRLATGIDVNVKFRRIADFEFTRE 142
           SLVAERL+DSNSNVNNKD GYVENQQQNIADAIDLLPRLATGIDVN+KF RI DFEFT E
Sbjct: 101 SLVAERLLDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNLKFTRIDDFEFTPE 160

Query: 143 CAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNALTGELVSLDTENIGIQPKSNLEE-D 201
           CAIFDLLDIPLYHGWIVD QD DTA AIGSKSYNAL GELV+L+T+NI   PK+N EE D
Sbjct: 161 CAIFDLLDIPLYHGWIVDQQDRDTATAIGSKSYNALMGELVALETQNIETLPKNNPEEED 220

Query: 202 CVDFVAATTAALGVPSPSLSKTRSFDDSPHSVSDQLPRKGDIEEEAEFLRALKLSEVDCK 261
           CVDFVAATTAALGVPSPSLSKTRSFDDSP SVSDQ PRKGD+EEE E LRALK+SEVD  
Sbjct: 221 CVDFVAATTAALGVPSPSLSKTRSFDDSPCSVSDQAPRKGDLEEEEELLRALKMSEVDSI 280

Query: 262 ASISDPVVGHVNGDGGAVSASMDEDMCNKQVKTVDSEDKLGKSAGAEDNSSHESEPSISD 321
             ISDPVVGH NG+GG VS  MDE+MC+ Q  TVDS   LGK+ G E N  HESE  I D
Sbjct: 281 DLISDPVVGHANGNGGEVSFDMDENMCDNQAVTVDSGVDLGKNTGKESNDFHESETFIPD 340

Query: 322 DCAASGKDCNEHASSASTLGETDNSSLKNDAISGFHQSAYMGLEESNGQKDSVEKNSIDA 381
           D  AS KD NEH SS STL E  N  LKNDA+SGFHQSA M  E+S  Q D VEK+ +DA
Sbjct: 341 DSTASSKDYNEHTSSTSTLEEAANPFLKNDAVSGFHQSASMEPEKSTEQNDVVEKHKLDA 400

Query: 382 LVQNESAAILSPEKASVSLFESCADVSGGGEKNHDQPSHTTTDHEVAVESQVFGATGISC 441
           LVQN+SA I SPEK SVS+FESCAD + G EK H+Q S  + DH+ + ESQ   ATG+ C
Sbjct: 401 LVQNKSAVIHSPEKYSVSVFESCADATMGDEKVHNQSSLRSIDHKTSDESQGLDATGVPC 460

Query: 442 LSPSCANTDSTGVEFHHKDASGELPSTIGESEPMYEGEECVLDTRTRNFEDREPVYEGEM 501
           LS S  ++DS+ + FH  DAS   PST+  SEPMYEGEECVLDT+T NFE+REPVYEGE 
Sbjct: 461 LSASHTDSDSSVIRFHQTDASEAFPSTVDGSEPMYEGEECVLDTKTGNFENREPVYEGEA 520

Query: 502 VLAEQADKNTLAVPDLKAKDGLTPEQGELIKSFLRNNASQLTFYGLFCLQDGLKERELCV 561
           VL EQADK+TL   D +AK+ +TPEQGEL+KSFLRNNASQLTFYGLFCLQ GLKERELCV
Sbjct: 521 VLQEQADKSTLDALDPRAKEEITPEQGELVKSFLRNNASQLTFYGLFCLQAGLKERELCV 580

Query: 562 FFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFKEFKVESHE 621
           FFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMT NFKEFKVES E
Sbjct: 581 FFRNNHFSTMFKFEGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTGNFKEFKVESLE 640

Query: 622 NN-NWDENNAMTSTADYLASIESASQAGLDVNSDLQLAIALQQQEFEQQPPRHNSQQPSV 680
           NN  WDENN MT+TADYLASIESA+QAGLD+NSDLQLAIALQQQEFEQQPPR   Q PSV
Sbjct: 641 NNTTWDENNVMTNTADYLASIESATQAGLDINSDLQLAIALQQQEFEQQPPRQTQQTPSV 700

Query: 681 TGSSRLVTGPQVPRNSGRTXXXXXXXXKPDGKSKEKCTLM 720
           +G+SRLVTGPQ PR++GR         KPD +SK+KCT+M
Sbjct: 701 SGTSRLVTGPQAPRSTGRN---PPSSPKPDARSKDKCTVM 737