Miyakogusa Predicted Gene
- chr2.CM0304.1000.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0304.1000.nc + phase: 0
(605 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CT573507_21.5 Bromo adjacent region; Transcription elongati... 852 0.0
IMGA|AC151526_6.5 Bromo adjacent region; Transcription elongatio... 672 0.0
IMGA|AC151526_41.5 Bromo adjacent region; Transcription elongati... 615 e-176
IMGA|CU019606_9.4 Bromo adjacent region; EGF-like; Zinc finger, ... 55 1e-07
IMGA|CU302348_18.4 Bromo adjacent region; Agenet chr05_pseudomol... 47 2e-05
IMGA|CR956430_25.4 Bromo adjacent region chr03_pseudomolecule_IM... 45 9e-05
>IMGA|CT573507_21.5 Bromo adjacent region; Transcription elongation
factor S-II, central region
chr05_pseudomolecule_IMGAG_V2 2396372-2391182 F
EGN_Mt071002 20080227
Length = 596
Score = 852 bits (2202), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/527 (76%), Positives = 467/527 (88%), Gaps = 1/527 (0%)
Query: 76 SPQPPEDAKPIGDPVRFSGKGRGRKKHFNSFEFDGSQYTLEDPVLLVPEDKEQKPYVAII 135
SPQ PEDAKPIG+P+R SGKGRGRK+H+ SFEFDG+QY+LEDPV+LVPEDKEQKPYVAII
Sbjct: 63 SPQTPEDAKPIGEPLRVSGKGRGRKRHYESFEFDGNQYSLEDPVMLVPEDKEQKPYVAII 122
Query: 136 KDITQPYNGNIMVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVV 195
KDI Q ++G+IMV GQWFYRPEEAEKKGGGSW S DTRELFYSFH D++PAESVMHKCVV
Sbjct: 123 KDIIQYFSGSIMVAGQWFYRPEEAEKKGGGSWKSCDTRELFYSFHRDEVPAESVMHKCVV 182
Query: 196 HFIPLHKQLPKRKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGE 255
HF+PL+KQ PKRK+HPGF+VQ+VYDT+ERKLW LTDKDYED+ QQEIDELV+KT++RIG+
Sbjct: 183 HFVPLNKQFPKRKQHPGFIVQRVYDTLERKLWKLTDKDYEDVNQQEIDELVQKTIKRIGD 242
Query: 256 PLDVEPEDAPDD-QEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNA 314
LD+EPE+AP QED+ KNKRSLRRKS+SP DVS+EEEGV KSDQH KPETPGSC+NN
Sbjct: 243 LLDIEPEEAPPAVQEDMTKNKRSLRRKSISPIDVSREEEGVSKSDQHSKPETPGSCVNND 302
Query: 315 SEHYRILVSFNALTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSN 374
SEH+RILV+FNALTG++ RDKWLER LQH+QYMC+SDDSTE++ N DEIK+++++
Sbjct: 303 SEHHRILVNFNALTGNIHRDKWLERLLQHIQYMCNSDDSTEKEKGSGNAESDEIKNKSND 362
Query: 375 TSSEIANDCQDKGQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLK 434
+SEIAND Q+KGQKSS+ F WPDAAVSAIVALEKASH+AFS+DFQKYNQKLRQL FNLK
Sbjct: 363 RTSEIANDSQNKGQKSSESFVWPDAAVSAIVALEKASHEAFSTDFQKYNQKLRQLDFNLK 422
Query: 435 NNAFLARRLLNGELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEF 494
NNA LARRLLNGEL+PSKILNMT ELKEGLTAEEKTKKEPDE +HMQMTDARCSRC +
Sbjct: 423 NNALLARRLLNGELKPSKILNMTPIELKEGLTAEEKTKKEPDEKQHMQMTDARCSRCTDS 482
Query: 495 KVGLRDIIHAGHNDRYQLECVSCGNSWYASRDEVSSLTIDGSDSKKSIGTAPWATAKFEV 554
KVGLR+IIHAGH+DRYQLECV+CGNSWYASR+EVS+LTID DSK+S+ T P +TAKFE
Sbjct: 483 KVGLREIIHAGHDDRYQLECVACGNSWYASRNEVSALTIDALDSKRSMSTTPSSTAKFED 542
Query: 555 IQKKLLSPRESENSANDISGKTNELGIAVNDTQKPIGMPKKDENVEA 601
+QKKL+SPR SENSA+D+S +T E + QK G PKKD+NVEA
Sbjct: 543 VQKKLVSPRGSENSADDLSKRTGEPSMPDLAAQKSFGKPKKDDNVEA 589
>IMGA|AC151526_6.5 Bromo adjacent region; Transcription elongation
factor S-II, central region
chr04_pseudomolecule_IMGAG_V2 35708464-35713216 E
EGN_Mt071002 20080227
Length = 579
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/526 (64%), Positives = 410/526 (77%), Gaps = 21/526 (3%)
Query: 79 PPEDAKPIGDPVRFSGKGRGRKKHFNSFEFDGSQYTLEDPVLLVPEDKEQKPYVAIIKDI 138
P EDAKPIG+PVRFSGKGRGRK HF SF+FDG QY+LEDPVLLVPE K+QKPYVAIIKDI
Sbjct: 69 PVEDAKPIGEPVRFSGKGRGRKNHFQSFDFDGDQYSLEDPVLLVPEVKDQKPYVAIIKDI 128
Query: 139 TQPYNGN--IMVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVH 196
TQ NGN +M+TGQWFYRP+EAEKKGGGSW S DTRELFYSFH D++PAESVMHKCVVH
Sbjct: 129 TQSINGNGSLMITGQWFYRPDEAEKKGGGSWQSVDTRELFYSFHRDEVPAESVMHKCVVH 188
Query: 197 FIPLHKQLPKRKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEP 256
F+P+HKQLP RK HPGF+VQKVYDT E KLW LTDKDY+D QQEIDELV+KT +R+GE
Sbjct: 189 FVPIHKQLPNRKVHPGFIVQKVYDTDELKLWKLTDKDYQDNNQQEIDELVQKTRQRLGEL 248
Query: 257 LDVEPEDAPDDQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASE 316
D++ ++A DQEDL++N+R+ + K +S DVS+E+E KS KP TPGSC +E
Sbjct: 249 PDIKTDEAAADQEDLIRNRRNFK-KGISAIDVSREDETSRKSLHSLKPGTPGSCPVITTE 307
Query: 317 HYRILVSFNALTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTS 376
RILV+FNALTGD RDK L LQ++QY+ +D+S +++NK + D I ++ ++ S
Sbjct: 308 PQRILVNFNALTGDSHRDKGLAMLLQNVQYLFDTDESKKKENKCGD-RSDAINNEGNDKS 366
Query: 377 SEIANDCQDKGQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNN 436
IAN+ +DK K+ K F WPD AV A+VALEKA + FSSD+QKY QKLRQL FNLKNN
Sbjct: 367 VGIANESKDKVPKNCKSFVWPDVAVPAVVALEKALYHTFSSDYQKYTQKLRQLVFNLKNN 426
Query: 437 AFLARRLLNGELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKV 496
AFL RRLLNGELEPSKILNMT +ELKEGLTAEE +K EPDE +HMQMTDARC C E KV
Sbjct: 427 AFLLRRLLNGELEPSKILNMTPTELKEGLTAEEISKDEPDEPQHMQMTDARCKICDEQKV 486
Query: 497 GLRDIIHAGHNDRYQLECVSCGNSWYASRDEVSSLTIDGSDSKKSIGTAPWATAKFEVIQ 556
G+RDII AG+ DRY LEC++CG+SW ASRD VS LT+D SDSK+++GTAPWATAKF+V
Sbjct: 487 GVRDIIRAGYADRYMLECIACGHSWSASRDAVSVLTLDASDSKRNVGTAPWATAKFDV-G 545
Query: 557 KKLLSPRESENSANDISGKTNELGIAVNDTQKPIGMPKKDENVEAT 602
KKL SPRES+ KTN++ + P+ +KDEN+E +
Sbjct: 546 KKLASPRESD--------KTNDIFMP------PVS--RKDENIEVS 575
>IMGA|AC151526_41.5 Bromo adjacent region; Transcription elongation
factor S-II, central region
chr04_pseudomolecule_IMGAG_V2 35721599-35726721 H
EGN_Mt071002 20080227
Length = 563
Score = 615 bits (1586), Expect = e-176, Method: Compositional matrix adjust.
Identities = 315/480 (65%), Positives = 377/480 (78%), Gaps = 1/480 (0%)
Query: 79 PPEDAKPIGDPVRFSGKGRGRKKHFNSFEFDGSQYTLEDPVLLVPEDKEQKPYVAIIKDI 138
P EDAKPIG PVR S +G+ + HF+SFEFDG+QYTLED VLL P+ K++K YVAIIKDI
Sbjct: 47 PLEDAKPIGKPVRVSRRGKNKINHFHSFEFDGNQYTLEDTVLLEPDGKDEKAYVAIIKDI 106
Query: 139 TQPYNGNIMVTGQWFYRPEEAEKKGGGSWISRDTRELFYSFHTDDIPAESVMHKCVVHFI 198
TQ N +M+TGQWFYRP EAEKKGGG+W S +TREL+YSFH D +PAESV H CVVHF+
Sbjct: 107 TQSPNDTLMITGQWFYRPYEAEKKGGGTWQSNETRELYYSFHQDAVPAESVKHTCVVHFV 166
Query: 199 PLHKQLPKRKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEIDELVKKTVERIGEPLD 258
P+HKQLP RK+HPGFVVQKVYD KLW LTDKDY+D KQ+EIDELV KT++R+GE D
Sbjct: 167 PIHKQLPNRKQHPGFVVQKVYDIETMKLWNLTDKDYKDDKQKEIDELVLKTIQRLGELPD 226
Query: 259 VEPEDAPDDQEDLVKNKRSLRRKSVSPPDVSKEEEGVPKSDQHPKPETPGSCINNASEHY 318
+E ++ P QEDL+KNKR ++KS+S D+SKE+E KS Q +PE PG + N SEHY
Sbjct: 227 IETDETPAGQEDLMKNKRDFKKKSISSLDLSKEKEASRKSVQSLEPEIPGKRVANTSEHY 286
Query: 319 RILVSFNALTGDVQRDKWLERSLQHLQYMCSSDDSTERDNKGSNVNCDEIKHQNSNTSSE 378
R+LV FNALTGD RDK LE LQ++QY+ +DD+ ++ +KGS+ N D I + ++ S E
Sbjct: 287 RVLVKFNALTGDAHRDKCLETLLQNVQYLFDTDDNMKKKDKGSD-NSDAINNGGNSKSLE 345
Query: 379 IANDCQDKGQKSSKPFKWPDAAVSAIVALEKASHDAFSSDFQKYNQKLRQLTFNLKNNAF 438
IAN+C+ K K+SKPF WPD AV A+VA+EKASHDAFSSD QKY QKLRQL FNLKNNAF
Sbjct: 346 IANECKGKVLKNSKPFVWPDVAVPAVVAVEKASHDAFSSDDQKYRQKLRQLAFNLKNNAF 405
Query: 439 LARRLLNGELEPSKILNMTYSELKEGLTAEEKTKKEPDESEHMQMTDARCSRCMEFKVGL 498
L RRLLNGELEPS+ILNMT +ELKEGLTAEE K EPDE +HMQMTDA C C E KVG+
Sbjct: 406 LLRRLLNGELEPSQILNMTPTELKEGLTAEELPKNEPDEQQHMQMTDASCKLCTERKVGV 465
Query: 499 RDIIHAGHNDRYQLECVSCGNSWYASRDEVSSLTIDGSDSKKSIGTAPWATAKFEVIQKK 558
RDII AG DRY LEC++CG+SW AS D VS LT+D SDSK++ GTA W TAKFE +KK
Sbjct: 466 RDIIRAGLADRYMLECIACGHSWSASCDAVSVLTLDASDSKRNAGTASWVTAKFEDAEKK 525
>IMGA|CU019606_9.4 Bromo adjacent region; EGF-like; Zinc finger,
FYVE/PHD-type chr03_pseudomolecule_IMGAG_V2
33161243-33157046 F EGN_Mt071002 20080227
Length = 218
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 117 DPVLLVPEDKEQKPYVAIIKDITQPYNG-NIMVTGQWFYRPEEAEKKGGGSWISRDTREL 175
D VL+ P D + YVA I+ I G N+ V +W+YRPEE+ GG ++EL
Sbjct: 29 DCVLMRPSDPSKPSYVAKIEGIEADSRGANVKVNVRWYYRPEESI---GGRRQFHGSKEL 85
Query: 176 FYSFHTDDIPAESVMHKCVVHFIPLHKQL 204
F S H D A+++ KCVVH + +L
Sbjct: 86 FLSDHFDVQSADTIEGKCVVHGFKSYTKL 114
>IMGA|CU302348_18.4 Bromo adjacent region; Agenet
chr05_pseudomolecule_IMGAG_V2 20621180-20625145 E
EGN_Mt071002 20080227
Length = 685
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 97 RGRKKHFNSFEFDGSQYTLEDPVLLVPEDKEQKPYVAIIKDITQPYNGNIMVTGQWFYRP 156
R R+ H+ +F DG Q ++ D V ++ E E K VA ++D+ + GN MV +WF+R
Sbjct: 145 RKRRNHYQAFRKDGFQISVYDFVFVLAE--ENKRLVAYLEDMYEGSKGNKMVVVRWFHRI 202
Query: 157 EEA 159
+E
Sbjct: 203 DEV 205
>IMGA|CR956430_25.4 Bromo adjacent region
chr03_pseudomolecule_IMGAG_V2 31086827-31082640 H
EGN_Mt071002 20080227
Length = 490
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 92 FSGKGRGRKKHFNSFEFDGSQYTLEDPVLLVPEDKEQKPYVAIIKDITQPYNGNIMVTGQ 151
F GK R + SF +DG YTL D V L E E++P++ + I + N + V
Sbjct: 20 FGGKKR-EVNFYESFTYDGVHYTLYDSVYLYKEG-EREPFIGKVIKIWENANKSKKVKIL 77
Query: 152 WFYRPEEAEKKGGGSWISRDTRELFYSFH-----TDDIPAESVMHKCVVHFIPLHKQLP- 205
WF+RP E G + ELF + T+ P E++ KC V I + P
Sbjct: 78 WFFRPCEIFNFLQGYEPVEN--ELFLASGEGLGLTNINPLEAIAGKCNVVCISKDNRNPP 135
Query: 206 ---KRKEHPGFVVQKVYDTVERKLWMLTDKDYEDIKQQEI 242
K ++ FV + +D + K+ D I+ + I
Sbjct: 136 PPDKDLQNADFVCYRFFDVGQHKILDKVDDKIAGIEVKNI 175