Miyakogusa Predicted Gene

chr2.CM0237.40.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0237.40.nd - phase: 0 /partial
         (290 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC157350_6.4 Peptidoglycan-binding LysM chr06_pseudomolecul...   119   2e-27

>IMGA|AC157350_6.4 Peptidoglycan-binding LysM
           chr06_pseudomolecule_IMGAG_V2 15353738-15357240 E
           EGN_Mt071002 20080227
          Length = 338

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/311 (33%), Positives = 146/311 (46%), Gaps = 40/311 (12%)

Query: 1   VADVKKMNSLVTDHQMFALKILHIPLPGRHPPSPCLSNGSSTPGHGDSDHSSPDRAHRDL 60
           VADVK+MN L +D QMFALK L IPLPGRHPPSP + +  +      S+   P      +
Sbjct: 46  VADVKRMNGLASDLQMFALKTLRIPLPGRHPPSP-VPDEPAKLRENSSERRPPRNGQSAM 104

Query: 61  LESFQSLRVKPSERKVSAKVSPAMSSLQGYYGLKXXXXXXXXXXXXXXXXMSER------ 114
            E  QSLR+KP ++    K+SPAM+ LQ YYGL                  S        
Sbjct: 105 KEPLQSLRLKPPKQ----KISPAMTILQKYYGLDSSNSRDTSGETELAMYTSSTSDHSRD 160

Query: 115 -------PL-SHHRKSKSLVNVILEEIMEKSDI----SLAEGNSNNWNDKLVQRREKS-V 161
                  P+ +HH KS +L   +L    E SD      +++G  +  ++K V+RR+K+ V
Sbjct: 161 DWLPKPSPIPNHHSKSTNLPFDLLTGNDEVSDYMCFTDISDGGGDRSDEKSVRRRQKADV 220

Query: 162 ADFTRIPELLLKE-DNGSSGGLPSRTGKGLALRQKAASRTAVATD-SESSXXXXXXXXXX 219
            +    PE L KE +N +     S  GK  ++R K+ASR ++  + S+S           
Sbjct: 221 DNGGTTPERLFKEGNNSNGSNGSSSNGKTFSMRPKSASRASLFPESSDSGWLDSISVGLG 280

Query: 220 DAFPXXXXXXXXXXXXXXCLHDQDNSGCSSSIWPASMWSLKPDLQARSTAGKPIFDGLPK 279
           D+                 L +Q+    +++ WP              T  KPIFDGLP 
Sbjct: 281 DSIFVDGLSGVRKSSSASSLREQEKYNSAATAWP--------------TISKPIFDGLPI 326

Query: 280 PISGRRNKAAL 290
           PI+GRR+K AL
Sbjct: 327 PITGRRSKTAL 337