Miyakogusa Predicted Gene
- chr2.CM0168.280.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0168.280.nc - phase: 0
(601 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CT027662_30.5 Peptidyl-prolyl cis-trans isomerase, cyclophi... 681 0.0
IMGA|CT027662_29.5 U box chr05_pseudomolecule_IMGAG_V2 5252158-5... 206 3e-53
IMGA|AC174329_31.5 Peptidyl-prolyl cis-trans isomerase, cyclophi... 103 2e-22
IMGA|AC202325_23.4 Peptidyl-prolyl cis-trans isomerase, cyclophi... 100 2e-21
IMGA|AC151621_8.4 Peptidyl-prolyl cis-trans isomerase, cyclophil... 100 3e-21
IMGA|AC186046_39.4 RNA-binding region RNP-1 (RNA recognition mot... 94 2e-19
IMGA|AC137831_40.4 Peptidyl-prolyl cis-trans isomerase, cyclophi... 85 8e-17
IMGA|AC174326_23.5 Peptidyl-prolyl cis-trans isomerase, cyclophi... 85 9e-17
IMGA|CU024876_25.4 Peptidyl-prolyl cis-trans isomerase, cyclophi... 84 1e-16
IMGA|AC145219_46.5 Peptidyl-prolyl cis-trans isomerase, cyclophi... 80 2e-15
IMGA|AC148176_42.5 Peptidyl-prolyl cis-trans isomerase, cyclophi... 63 3e-10
IMGA|AC202593_8.4 Peptidyl-prolyl cis-trans isomerase, cyclophil... 51 2e-06
IMGA|CT967303_30.4 Peptidyl-prolyl cis-trans isomerase, cyclophi... 50 3e-06
>IMGA|CT027662_30.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr05_pseudomolecule_IMGAG_V2 5248585-5245890 E
EGN_Mt071002 20080227
Length = 502
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/506 (68%), Positives = 362/506 (71%), Gaps = 11/506 (2%)
Query: 97 SEGEFQCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEPFTRDDLI 156
S GE+ CPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDE FTRDDL+
Sbjct: 7 SAGEYHCPVLNKVFTEFTHIVAVKTTGNVFCYEAVKELNIKTKNWKELLTDEAFTRDDLV 66
Query: 157 TIQNPNALDSKVLLDFDHVKHNLKIDDEELQKMSSDPTYNINMSGDLKQMFQEIGTEKGK 216
TIQNPNALD KVLLDFDHVK NLKIDDEELQKMSSDP YNINMSGD+KQM +E+GTE+GK
Sbjct: 67 TIQNPNALDQKVLLDFDHVKQNLKIDDEELQKMSSDPAYNINMSGDIKQMLKELGTEQGK 126
Query: 217 ETAMHXXXXXXXXXXXXXXXXXXXXXXXXXKEDSKSNPNEEAKAPQAFSIVDAASASVHG 276
ETA+H KEDSKS APQA SIVDAASA+VHG
Sbjct: 127 ETALHGGGGGKAQKERAAALAAILAARSQVKEDSKSADG----APQALSIVDAASAAVHG 182
Query: 277 RXXXXXXXXXXXXXXXRIAMHKAGDRAPVNAKLVKSRYTTGAASRSFTSTSFDPVTKNEF 336
R RIAMH AGDRAPVNAK+VKSRYTTGAASRSFTSTS+DPVTKN++
Sbjct: 183 RSAAAAKASSSDKTAARIAMHVAGDRAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNDY 242
Query: 337 EYVKVEKNPKKKGYVQLHTTHGELNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRN 396
EYVKVEKNPKKKGYVQLHTTHG+LNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRN
Sbjct: 243 EYVKVEKNPKKKGYVQLHTTHGDLNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRN 302
Query: 397 FMIQXXXXXXXXXXXESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSA 456
FMIQ ESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSA
Sbjct: 303 FMIQGGDPTGTGRGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSA 362
Query: 457 PHLNFKHTVFXXXXXXXXXXXXMEKVPVDDDDRPLDEIKITNVTIFVNPYTEPXXXXXXX 516
HLNFKHTVF MEKVPVDD DRPL+EIKIT VT FVNPYTEP
Sbjct: 363 NHLNFKHTVFGGVVGGLTTLATMEKVPVDDSDRPLEEIKITGVTTFVNPYTEPDEEEEQA 422
Query: 517 XXXXXXXXXXXXXXIGSWYSNPGAGISEXXXXXXXXXXXXYLKARSA-QAESANVDXXXX 575
+GSWYSNPGAG SE YLKAR+A AE A VD
Sbjct: 423 NAKEKNANDEENDKVGSWYSNPGAGTSESGGTGVGGGVGKYLKARNAPPAEPAAVD---- 478
Query: 576 XXXXXXXXXXXXXXXXSSEFNDFSAW 601
S EF DFS W
Sbjct: 479 --TGTAVVGKKRKAVVSGEFKDFSGW 502
>IMGA|CT027662_29.5 U box chr05_pseudomolecule_IMGAG_V2
5252158-5251175 H EGN_Mt071002 20080227
Length = 105
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 91/98 (92%), Positives = 96/98 (97%)
Query: 1 MGKKQHSKDRMFITKTEWATEWGGFKSKDNRTVFKRLPFYCCALTFTPFEYPVCTPDGSV 60
MGKKQHSKDRMF+TKTEWATEWGG+KSK+NRTVFKRLPFYCCALTFTPFE+PVCTPDGSV
Sbjct: 1 MGKKQHSKDRMFLTKTEWATEWGGYKSKENRTVFKRLPFYCCALTFTPFEFPVCTPDGSV 60
Query: 61 FDVMNITPYVIKYGKHPVTGTPLKQQDLIPLNFHKNSE 98
FDVMNITPY+IKYGKHPVTG PLKQQDLIPL FHKNSE
Sbjct: 61 FDVMNITPYIIKYGKHPVTGAPLKQQDLIPLTFHKNSE 98
>IMGA|AC174329_31.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr08_pseudomolecule_IMGAG_V2 19128256-19132659 F
EGN_Mt071002 20080227
Length = 373
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 358 GELNIELHCDIAPRACENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXX-XX 405
G + IEL D+ P+ ENF +LC E+G ++ FHR ++ FMIQ
Sbjct: 18 GRIVIELFADVVPKTAENFRSLCTGEKGIGPHTNVPLHFKNSIFHRVVKGFMIQGGDISA 77
Query: 406 XXXXXXESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTV 465
ESI+G F+DE N L H +G++SMANSGP+TNGSQFFI PHL+ KH V
Sbjct: 78 SDGTGGESIYGPNFEDE-NFDLKHERKGILSMANSGPNTNGSQFFITTTRTPHLDGKHVV 136
Query: 466 FXXXXXXXXXXXXMEKVPVDDDDRPLDEIKITN 498
F +E PV ++DRP ++ I +
Sbjct: 137 FGKVVKGIGVVRSVELGPVGENDRPEQDVVIAD 169
>IMGA|AC202325_23.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type - both ends partial chr04_pseudomolecule_IMGAG_V2
28380013-28371194 E EGN_Mt071002 20080227
Length = 311
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 83/153 (54%), Gaps = 13/153 (8%)
Query: 358 GELNIELHCDIAPRACENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXXXXX 406
G + +EL+ D+ P+ ENF LC E+G ++ G FHR ++ MI+
Sbjct: 18 GRILVELYNDVVPKTAENFRALCTGEKGSGPNTGVPLHFKGSCFHRIVKGAMIEGGDIST 77
Query: 407 X-XXXXESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTV 465
ESI+G F+DE N ++ H +G++SMAN+GP+TNGSQFFI HL+ KH V
Sbjct: 78 GDGTGGESIYGLKFEDE-NFEMKHERKGMLSMANTGPNTNGSQFFISTTRTAHLDGKHVV 136
Query: 466 FXXXXXXXXXXXXMEKVPVDDDDRPLDEIKITN 498
F +E V D+DRP+ ++KI +
Sbjct: 137 FGKVVKGMGVVRSIEHVTTGDEDRPVLDVKIVD 169
>IMGA|AC151621_8.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr04_pseudomolecule_IMGAG_V2 28548058-28551565 E
EGN_Mt071002 20080227
Length = 361
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 83/154 (53%), Gaps = 13/154 (8%)
Query: 357 HGELNIELHCDIAPRACENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXX-X 404
G + +EL+ D+ P+ ENF LC E+G ++ G FHR ++ MI+
Sbjct: 17 EGRILVELYNDVVPKTAENFRALCTGEKGSGPNTGVPLHFKGSCFHRIVKGAMIEGGDIS 76
Query: 405 XXXXXXXESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHT 464
ESI+G F+DE N ++ H +G++SMAN+GP+TNGSQFFI HL+ KH
Sbjct: 77 TGDGTGGESIYGLKFEDE-NFEMKHERKGMLSMANTGPNTNGSQFFISTTRTAHLDGKHV 135
Query: 465 VFXXXXXXXXXXXXMEKVPVDDDDRPLDEIKITN 498
VF +E V D+DRP+ ++KI +
Sbjct: 136 VFGKVVKGMGVVRSIEHVTTGDEDRPVLDVKIVD 169
>IMGA|AC186046_39.4 RNA-binding region RNP-1 (RNA recognition
motif); Zinc finger, CCHC-type; Peptidyl-prolyl
cis-trans isomerase, cyclophilin type
chr06_pseudomolecule_IMGAG_V2 4533454-4540692 E
EGN_Mt071002 20080227
Length = 604
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 351 VQLHTTHGELNIELHCDIAPRACENFITLCERGYYNGVAFHRSIRNFMIQXXXXXXXXXX 410
V + T+ G++ I+LH P C+NF+ LC+ YYNG FH +++F Q
Sbjct: 3 VLMVTSLGDMVIDLHTQKCPLTCKNFLKLCKIKYYNGCLFHTVLKDFTAQTGDPTGTGTA 62
Query: 411 XESIW-------GKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFI-LYKSAPHLNFK 462
+SI+ + F DE++ L HS G V+MA++G + N SQF+I L +L+ K
Sbjct: 63 GDSIYKFLYGDQARFFNDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGK 122
Query: 463 HTVFXXXXXXXXXXXXMEKVPVDDDDRPLDEIKITNVTIFVNPYTEP 509
HTVF + + D RP I+I + I +P+ +P
Sbjct: 123 HTVFGEVAEGFETLTRINEAYADGKGRPFKNIRIKHTYILEDPFDDP 169
>IMGA|AC137831_40.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr07_pseudomolecule_IMGAG_V2 28876667-28865788 H
EGN_Mt071002 20080227
Length = 222
Score = 85.1 bits (209), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 358 GELNIELHCDIAPRACENFITLCERGY-YNGVAFHRSIRNFMIQXXX-XXXXXXXXESIW 415
G + + L ++AP+ ENF ++GY Y G +FHR I+ FMIQ SI+
Sbjct: 76 GRIVLGLFGEVAPKTVENFR---DKGYGYKGCSFHRIIKEFMIQGGDFTEGNGTGGVSIY 132
Query: 416 GKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFXXXXXXXXX 475
G F+DE + L H G GV+SMAN+GP+TNGSQFFI P L+ +H VF
Sbjct: 133 GSSFEDE-SFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDV 191
Query: 476 XXXMEKVPVDDDDRPLDEIKITN 498
+E D P +I N
Sbjct: 192 VRTLESQETSRLDIPKKPCRIVN 214
>IMGA|AC174326_23.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr08_pseudomolecule_IMGAG_V2 9936161-9930599 F
EGN_Mt071002 20080227
Length = 185
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 62/118 (52%), Gaps = 10/118 (8%)
Query: 358 GELNIELHCDIAPRACENFITLCERGY--------YNGVAFHRSIRNFMIQXXXXXXX-X 408
G + +EL DIAP+ ENF C Y Y G FHR I++FMIQ
Sbjct: 32 GRIKMELFADIAPKTAENFRQFCTGEYRKAGLPIGYKGCQFHRVIKDFMIQAGDYVKGDG 91
Query: 409 XXXESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVF 466
SI+G F DE N H+G G++SMANSGP+TNG QFFI L+ KH VF
Sbjct: 92 SGCASIYGLKFDDE-NFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVF 148
>IMGA|CU024876_25.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr03_pseudomolecule_IMGAG_V2 32876341-32875590 F
EGN_Mt071002 20080227
Length = 191
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 358 GELNIELHCDIAPRACENFITLC--ERG--------YYNGVAFHRSIRNFMIQXXX-XXX 406
G + +EL+ D P +NF LC E+G +Y G FHR I +FM Q
Sbjct: 26 GRIVMELYADTTPLTADNFRALCTGEKGLGSSGKPLHYKGSTFHRVIPDFMCQGGDFTAG 85
Query: 407 XXXXXESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVF 466
ESI+G F DE N H+G GV+SMAN+GP TNGSQFFI L+ KH VF
Sbjct: 86 NGTGGESIYGSKFADE-NFIKTHTGPGVLSMANAGPGTNGSQFFICTAKTEWLDGKHVVF 144
Query: 467 XXXXXXXXXXXXMEKV 482
+EKV
Sbjct: 145 GEVVEGMEVVKEIEKV 160
>IMGA|AC145219_46.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr03_pseudomolecule_IMGAG_V2 17754974-17756118 E
EGN_Mt071002 20080227
Length = 162
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 63/120 (52%), Gaps = 12/120 (10%)
Query: 358 GELNIELHCDIAPRACENFITLC--ERG--------YYNGVAFHRSIRNFMIQXXX-XXX 406
G + + L P+ ENF LC E+G +Y G AFHR I +FM+Q
Sbjct: 7 GRIVMGLFGTTVPKTAENFRALCTGEKGVGKSGNPLHYKGSAFHRIIPSFMVQGGDFTSG 66
Query: 407 XXXXXESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVF 466
ESI+G F DE N KL H+G G +SMANSG TNGSQFFI L+ +H VF
Sbjct: 67 DGRGGESIYGDKFADE-NFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVF 125
>IMGA|AC148176_42.5 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr03_pseudomolecule_IMGAG_V2 20774439-20766905 E
EGN_Mt071002 20080227
Length = 895
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 14/148 (9%)
Query: 363 ELHCDIAPRACENFITLC--ERG---------YYNGVAFHRSIRNFMIQXXX-XXXXXXX 410
EL D+AP+ ENF LC ERG +Y G FH+ ++ +++
Sbjct: 29 ELFHDVAPKTAENFRALCTGERGISSNTGKLLHYKGSFFHQIMKGSIVKGGDFVNRNGTG 88
Query: 411 XESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFXXXX 470
ESI+G F DE + +L H G G++SMA + GS F I K+ HL+ K+ VF
Sbjct: 89 GESIYGSNFPDE-SPRLKHDGPGLLSMAIADRDKLGSHFIITLKADHHLDRKYVVFGRLV 147
Query: 471 XXXXXXXXMEKVPVDDDDRPLDEIKITN 498
+E V DD+ P +KI N
Sbjct: 148 EGLKVLKKIEDV-GDDEGHPTVTVKIIN 174
>IMGA|AC202593_8.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr01_pseudomolecule_IMGAG_V2 3598664-3601419 H
EGN_Mt071002 20080227
Length = 221
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 363 ELHCDIAPRACENFITLCERG---------YYNGVAFHRSIRNFMIQXXX-XXXXXXXXE 412
EL D+AP+ ENF L +G +Y G FH+ ++ +++ E
Sbjct: 26 ELFYDVAPKTAENFRAL-RKGVSPNTGKSLHYKGSFFHQILKGSIVKGGDFINRNGTGGE 84
Query: 413 SIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFXXXXXX 472
SI+ K F DE + +L H G++SMA + T GS F I K+ HL+ KH VF
Sbjct: 85 SIYPK-FPDE-SPRLKHDSPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLVQG 142
Query: 473 XXXXXXMEKVPVDDDDRPLDEIKITN 498
+E V +++ P +KI N
Sbjct: 143 YDILKKIEDVG-NEEGLPTVTVKIIN 167
>IMGA|CT967303_30.4 Peptidyl-prolyl cis-trans isomerase, cyclophilin
type chr03_pseudomolecule_IMGAG_V2 24306809-24307750 H
EGN_Mt071002 20080227
Length = 75
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 425 SKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVF 466
++L +G G VSM N+GP+TNGSQFFI P L+ +H VF
Sbjct: 10 NRLSRTGPGAVSMTNAGPNTNGSQFFICTIKTPWLDQRHVVF 51