Miyakogusa Predicted Gene

chr2.CM0056.430.nc

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr2.CM0056.430.nc - phase: 0 
         (715 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CT025838_1.5 Threonyl-tRNA synthetase, class IIa; Anticodon...  1220   0.0  
IMGA|AC140849_29.4 Threonyl-tRNA synthetase, mitochondrial precu...   304   1e-82

>IMGA|CT025838_1.5 Threonyl-tRNA synthetase, class IIa;
           Anticodon-binding; Aminoacyl-transfer RNA synthetase,
           class II chr05_pseudomolecule_IMGAG_V2 14012359-14022792
           E EGN_Mt071002 20080227
          Length = 678

 Score = 1220 bits (3157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/685 (84%), Positives = 620/685 (90%), Gaps = 17/685 (2%)

Query: 1   MLCSLIRLRRYAAASPSXXXXXXXXXXRFYXXXXXXXXXAMVAHAKDDAYLTAAIPKRIS 60
           MLCSLIRLRR   +S +           F           +VAH KD++YL A IPKR+ 
Sbjct: 1   MLCSLIRLRRNIPSSTTSLFLHIGNRFNF----SSSAAAMVVAHPKDESYLAATIPKRVQ 56

Query: 61  MFEAIQAEQRTLRLTLSPDPIKVTLPDGSVRDAKKWQTTPLDVARDISKNLAANALIAKV 120
           +FEA+QAEQ+T RL+LSPDPIKVTLPDG+V++ KKWQTTP D+AR+ISKNLA NALI+KV
Sbjct: 57  IFEALQAEQQTRRLSLSPDPIKVTLPDGNVKEGKKWQTTPFDIAREISKNLANNALISKV 116

Query: 121 NGVLWDMARPLEEDCELQIFKFNDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRG 180
           NGVLWDM RPLEED  LQ+FKF+DDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRG
Sbjct: 117 NGVLWDMNRPLEEDSSLQLFKFDDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRG 176

Query: 181 EGFYYDAFYGDLGLNDDHFKQIEAGALKAAAEKQPFERIEVTRDQALEMFSENKFKIEII 240
           EGFYYDAFYGDLGLNDDHFKQIEA ALKA AEKQPFERIEVTRDQALE+FS+NKFK    
Sbjct: 177 EGFYYDAFYGDLGLNDDHFKQIEAVALKAVAEKQPFERIEVTRDQALEIFSDNKFK---- 232

Query: 241 NDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGI 300
                     +YRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGI
Sbjct: 233 ---------AMYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGI 283

Query: 301 SYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNKLMDFI 360
           SYPD KSLKEYL RLEEAKKYDHRI+GVKQELI HHEWSPGSWFFLPHGARIYNKLM+FI
Sbjct: 284 SYPDNKSLKEYLLRLEEAKKYDHRIVGVKQELIYHHEWSPGSWFFLPHGARIYNKLMNFI 343

Query: 361 RNQYRDRGYQEVISPNVFNMELWEKSGHAANYREDMFVFEIDKQDFGLKPMNCPGHCLMF 420
           R+QYRDRGYQEVISPNVFNM+LW +SGHAANY+EDMFV EIDKQ+FGLKPMNCPGHCLMF
Sbjct: 344 RDQYRDRGYQEVISPNVFNMDLWVQSGHAANYKEDMFVLEIDKQEFGLKPMNCPGHCLMF 403

Query: 421 QHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKEEVRKAL 480
           +HRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIK+EVR AL
Sbjct: 404 KHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKDEVRNAL 463

Query: 481 NFINYVYEVFGFTYELKLSTRPEKYLGELATWEKAENALKEALDEFGKPWQLNEGDGAFY 540
           NFI++VY++FGF+YELKLSTRPEKYLG + TWEKAE +LKEALDEFGKPWQLNEGDGAFY
Sbjct: 464 NFIDHVYKIFGFSYELKLSTRPEKYLGNIETWEKAEASLKEALDEFGKPWQLNEGDGAFY 523

Query: 541 GPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERM 600
           GPKIDISVSDAL RKFQCATLQLDFQLPDRFKLE+SAEDEAKIERPVMIHRAILGSVERM
Sbjct: 524 GPKIDISVSDALRRKFQCATLQLDFQLPDRFKLEFSAEDEAKIERPVMIHRAILGSVERM 583

Query: 601 FAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKK 660
           FAILLEHYKGKWP WLSPRQAI+CPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKK
Sbjct: 584 FAILLEHYKGKWPFWLSPRQAILCPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKK 643

Query: 661 VREAQLAQYNYILVVGEEEANTGQV 685
           VREAQLAQYNYILVVGEEEA TGQV
Sbjct: 644 VREAQLAQYNYILVVGEEEAKTGQV 668


>IMGA|AC140849_29.4 Threonyl-tRNA synthetase, mitochondrial
           precursor chr03_pseudomolecule_IMGAG_V2
           21262999-21266224 E EGN_Mt071002 20080227
          Length = 261

 Score =  304 bits (778), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 157/241 (65%), Positives = 175/241 (72%), Gaps = 38/241 (15%)

Query: 154 SSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAAEK 213
           S +H   +S  T++GCKLCIGPCTT   GFYYDA Y +LGL D  FK IE+GA K   EK
Sbjct: 35  SLSHDPIKSPGTKHGCKLCIGPCTTTENGFYYDAIYCNLGLKDYQFKIIESGAFKVVVEK 94

Query: 214 QPFERIEVTRDQALEMFSENKFK----------------------IEIINDLPADKTITV 251
           QP   IEVTRDQALE+FS++KFK                      +EIIN+L  D+TITV
Sbjct: 95  QP---IEVTRDQALEIFSDDKFKASAFTLLFLTLALLSFAPNDYIVEIINNLAPDETITV 151

Query: 252 YRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEY 311
           YRCGPLVDL R             ACL+ASSAYWRG K+R+SLQ VYGISYPDQKSLKEY
Sbjct: 152 YRCGPLVDLYR-------------ACLEASSAYWRGGKNRKSLQSVYGISYPDQKSLKEY 198

Query: 312 LHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNKLMDFIRNQYRDRGYQE 371
           LH+LEEAKKYDHRILG+KQEL+  HEWSPGSWFFLPHGA IYNKLMDFIRNQYR RGYQE
Sbjct: 199 LHQLEEAKKYDHRILGLKQELVSLHEWSPGSWFFLPHGALIYNKLMDFIRNQYRHRGYQE 258

Query: 372 V 372
           V
Sbjct: 259 V 259



 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 41 MVAHAKDDAYLTAAIPKRISMFEAIQAEQRTLRLTLSPDPIK 82
          M AHAKD+A+L A IPK I +FEAI  E +T +L+LS DPIK
Sbjct: 1  MAAHAKDEAHLNATIPKHIRLFEAIHLELQTRQLSLSHDPIK 42