Miyakogusa Predicted Gene
- chr2.CM0031.340.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0031.340.nc - phase: 0
(886 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC130803_8.4 Homeodomain-related chr05_pseudomolecule_IMGAG... 130 3e-30
IMGA|AC124972_9.5 Homeodomain-related chr05_pseudomolecule_IMGAG... 130 3e-30
IMGA|AC136504_16.5 Lupus La protein chr08_pseudomolecule_IMGAG_V... 107 3e-23
IMGA|AC124972_13.5 Homeodomain-related chr05_pseudomolecule_IMGA... 105 1e-22
IMGA|CU013532_35.4 Lupus La protein chr03_pseudomolecule_IMGAG_V... 103 3e-22
IMGA|CU457782_16.3 Lupus La protein chr03_pseudomolecule_IMGAG_V... 103 3e-22
IMGA|CU013532_15.4 Lupus La protein chr03_pseudomolecule_IMGAG_V... 102 5e-22
IMGA|CU457782_28.3 Lupus La protein chr03_pseudomolecule_IMGAG_V... 102 5e-22
IMGA|AC123571_50.4 RNA-binding protein Lupus La chr05_pseudomole... 102 8e-22
IMGA|AC146790_53.4 Lupus La protein chr01_pseudomolecule_IMGAG_V... 100 3e-21
IMGA|AC202325_17.4 RNA-binding region RNP-1 (RNA recognition mot... 49 1e-05
>IMGA|AC130803_8.4 Homeodomain-related chr05_pseudomolecule_IMGAG_V2
31746663-31749183 H EGN_Mt071002 20080227
Length = 461
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 102/203 (50%), Gaps = 45/203 (22%)
Query: 1 MGTESWPALSDAQXXXXXXXXXXXXXXXXXXXXXXXGAGVIAARPPSVQKSNGPGNLNPS 60
+GT+S PALSDAQ G +A R PSVQKSNG GN N
Sbjct: 25 VGTKSSPALSDAQTPKPINHVEKLSVP---------SVGQVAPRAPSVQKSNGSGNFNLK 75
Query: 61 HKGPPSRYQKPGPKRN--GNGAPPFXXXXXXXXXXXXXXXXXXXXXXHIAVPGYAXXXXX 118
+K P R +KPGPKRN NG P F +A Y
Sbjct: 76 NKMPSPRSRKPGPKRNRNTNGTPHFP----------------------VATMPYPNG--- 110
Query: 119 XXXXSVENPLAKPGSQAPGQAFTPPAHAVEGKNVKPPVQGDPNGYAVNFSNGRPNVQEQG 178
ENP A GQ FTPPAHA++ K+V+PPVQ D N YAVN+ NGRPN+QEQG
Sbjct: 111 ------ENP-KHVSPAAAGQGFTPPAHAIDAKHVQPPVQEDLNAYAVNYPNGRPNIQEQG 163
Query: 179 DHLNPAWHHQR--PSRGNMSMQH 199
DH+N HHQR P++ NM MQH
Sbjct: 164 DHVNHGRHHQRPFPAKANMPMQH 186
>IMGA|AC124972_9.5 Homeodomain-related chr05_pseudomolecule_IMGAG_V2
31726128-31723608 H EGN_Mt071002 20080227
Length = 461
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 102/203 (50%), Gaps = 45/203 (22%)
Query: 1 MGTESWPALSDAQXXXXXXXXXXXXXXXXXXXXXXXGAGVIAARPPSVQKSNGPGNLNPS 60
+GT+S PALSDAQ G +A R PSVQKSNG GN N
Sbjct: 25 VGTKSSPALSDAQTPKPINHVEKLSVP---------SVGQVAPRAPSVQKSNGSGNFNLK 75
Query: 61 HKGPPSRYQKPGPKRN--GNGAPPFXXXXXXXXXXXXXXXXXXXXXXHIAVPGYAXXXXX 118
+K P R +KPGPKRN NG P F +A Y
Sbjct: 76 NKMPSPRSRKPGPKRNRNTNGTPHFP----------------------VATMPYPNG--- 110
Query: 119 XXXXSVENPLAKPGSQAPGQAFTPPAHAVEGKNVKPPVQGDPNGYAVNFSNGRPNVQEQG 178
ENP A GQ FTPPAHA++ K+V+PPVQ D N YAVN+ NGRPN+QEQG
Sbjct: 111 ------ENP-KHVSPAAAGQGFTPPAHAIDAKHVQPPVQEDLNAYAVNYPNGRPNIQEQG 163
Query: 179 DHLNPAWHHQR--PSRGNMSMQH 199
DH+N HHQR P++ NM MQH
Sbjct: 164 DHVNHGRHHQRPFPAKANMPMQH 186
>IMGA|AC136504_16.5 Lupus La protein chr08_pseudomolecule_IMGAG_V2
17824368-17821912 E EGN_Mt071002 20080227
Length = 455
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
Query: 261 MPPETLALRTSIIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIA 320
PP L+T I+ QI+YYFSD NL ND YL MD+QGWVP++ +AGF +VK ++ +I
Sbjct: 328 FPPPDSELQTKIVNQIDYYFSDLNLNNDTYLKRNMDDQGWVPLNLIAGFNKVKLLTDNIQ 387
Query: 321 FIIDALQSSNTVEVQGDKIRKSNDWSKWIQVSSGNSGSSTAQIQQSRLVKGADNSQNIDA 380
++DA+++S+ VEVQ DKIR+ N WI +SS + +QI + A N QNID
Sbjct: 388 IVVDAVRTSSVVEVQDDKIRRRN----WITLSSQFHNVNGSQI----AAQLAKNIQNIDL 439
Query: 381 LGDK 384
+K
Sbjct: 440 ETNK 443
>IMGA|AC124972_13.5 Homeodomain-related
chr05_pseudomolecule_IMGAG_V2 31715476-31717932 H
EGN_Mt071002 20080227
Length = 436
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 86/180 (47%), Gaps = 58/180 (32%)
Query: 1 MGTESWPALSDAQXXXXXXXXXXXXXXXXXXXXXXXGAGVIAARPPSVQKSNGPGNLNPS 60
+GT+SWPALS AQ SVQKSNG GN NP
Sbjct: 32 VGTKSWPALSHAQTPKPMNHVENV----------------------SVQKSNGSGNFNPK 69
Query: 61 HKGPPSRYQKPGPKRNGN--GAPPFXXXXXXXXXXXXXXXXXXXXXXHIAVPGYAXXXXX 118
+K P RY+KPGPKRN N G P F +A Y
Sbjct: 70 NKMPSPRYRKPGPKRNSNTNGTPHFP----------------------VATMPYPNG--- 104
Query: 119 XXXXSVENPLAKPGS-QAPGQAFTPPAHAVEGKNVKPPVQGDPNGYAVNFSNGRPNVQEQ 177
ENP KP S A GQ FTPPAH ++ K+V+PPVQGDPN YAVN+ NGRPN+Q++
Sbjct: 105 ------ENP--KPVSLAAAGQGFTPPAHVIDAKHVQPPVQGDPNAYAVNYPNGRPNIQKE 156
>IMGA|CU013532_35.4 Lupus La protein chr03_pseudomolecule_IMGAG_V2
13950787-13948368 H EGN_Mt071002 20080227
Length = 350
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 66/89 (74%)
Query: 272 IIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSSNT 331
I+KQI+YYFSD NL ND +L S MDE GWVP+S +A F RVK ++++I I+D+L++S+
Sbjct: 249 ILKQIDYYFSDVNLTNDEFLKSNMDEHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSV 308
Query: 332 VEVQGDKIRKSNDWSKWIQVSSGNSGSST 360
VEV GDK+RK +W++++ GSS+
Sbjct: 309 VEVNGDKLRKRKEWARFLSPVYQQVGSSS 337
>IMGA|CU457782_16.3 Lupus La protein chr03_pseudomolecule_IMGAG_V2
13817433-13819852 H EGN_Mt071002 20080227
Length = 350
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 66/89 (74%)
Query: 272 IIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSSNT 331
I+KQI+YYFSD NL ND +L S MDE GWVP+S +A F RVK ++++I I+D+L++S+
Sbjct: 249 ILKQIDYYFSDVNLTNDEFLKSNMDEHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSV 308
Query: 332 VEVQGDKIRKSNDWSKWIQVSSGNSGSST 360
VEV GDK+RK +W++++ GSS+
Sbjct: 309 VEVNGDKLRKRKEWARFLSPVYQQVGSSS 337
>IMGA|CU013532_15.4 Lupus La protein chr03_pseudomolecule_IMGAG_V2
13908198-13905899 H EGN_Mt071002 20080227
Length = 380
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 62/78 (79%)
Query: 272 IIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSSNT 331
I+KQI+YYFSD NL ND +L S MDE GWVP+S +A F RVK ++++I I+D+L++S+
Sbjct: 248 ILKQIDYYFSDVNLTNDEFLKSNMDEHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSV 307
Query: 332 VEVQGDKIRKSNDWSKWI 349
VEV GDK+RK +W++++
Sbjct: 308 VEVNGDKLRKRKEWARFL 325
>IMGA|CU457782_28.3 Lupus La protein chr03_pseudomolecule_IMGAG_V2
13860022-13862321 H EGN_Mt071002 20080227
Length = 380
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 62/78 (79%)
Query: 272 IIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDALQSSNT 331
I+KQI+YYFSD NL ND +L S MDE GWVP+S +A F RVK ++++I I+D+L++S+
Sbjct: 248 ILKQIDYYFSDVNLTNDEFLKSNMDEHGWVPVSLIANFPRVKNLTNNIELILDSLRNSSV 307
Query: 332 VEVQGDKIRKSNDWSKWI 349
VEV GDK+RK +W++++
Sbjct: 308 VEVNGDKLRKRKEWARFL 325
>IMGA|AC123571_50.4 RNA-binding protein Lupus La
chr05_pseudomolecule_IMGAG_V2 8908359-8903415 E
EGN_Mt071002 20080227
Length = 536
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/99 (48%), Positives = 64/99 (64%), Gaps = 14/99 (14%)
Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKR--------------VK 313
L + I+ QI+YYFS+ENL D +L MD QGWVPI+ +AGFK+ V
Sbjct: 356 LHSKIVNQIDYYFSNENLVKDIFLRKNMDAQGWVPITLIAGFKKRERERERERERESEVM 415
Query: 314 RMSSDIAFIIDALQSSNTVEVQGDKIRKSNDWSKWIQVS 352
++ +I IIDA+++S+ VEVQGDKIR+ NDW KWI S
Sbjct: 416 DLTDNIQLIIDAIRTSSVVEVQGDKIRRQNDWEKWIMPS 454
>IMGA|AC146790_53.4 Lupus La protein chr01_pseudomolecule_IMGAG_V2
8598485-8605203 E EGN_Mt071002 20080227
Length = 546
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 4/83 (4%)
Query: 267 ALRTSIIKQIEYYFSDENLQNDRYLISLMDEQGWVPISTVAGFKRVKRMSSDIAFIIDAL 326
+L I+ QI+YYFSD NL ND +L S MDE+GWVPI+ +A F RVK ++S+I I+D++
Sbjct: 407 SLSNVIVNQIDYYFSDINLANDEFLKSNMDEEGWVPITLIANFPRVKNLTSNIQLILDSM 466
Query: 327 QSSNTVEVQGDKIRKSNDWSKWI 349
++SN V+VQGDK+R+ N WI
Sbjct: 467 RNSNVVDVQGDKLRRRN----WI 485
>IMGA|AC202325_17.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 28406668-28403838 H
EGN_Mt071002 20080227
Length = 404
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 268 LRTSIIKQIEYYFSDENLQNDRYLISLM--DEQGWVPISTVAGFKRVKRMSSDIAFIIDA 325
L+ I+KQ+EY FSD +L + M D +G+VPI+ +A K++K + ++I + A
Sbjct: 99 LQQKIVKQVEYQFSDLSLLANESFQKQMNKDPEGYVPITVIASTKKIKSLVNNIHLLTQA 158
Query: 326 LQSSNTVEVQGD 337
++ S+ + + D
Sbjct: 159 IRHSSKLVLSAD 170