Miyakogusa Predicted Gene
- chr2.CM0018.600.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0018.600.nd + phase: 0 /pseudo/partial
(423 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|CU326394_10.4 KH, type 1 chr05_pseudomolecule_IMGAG_V2 1555... 304 5e-83
IMGA|AC202336_9.4 KH, type 1 chr01_pseudomolecule_IMGAG_V2 49025... 176 2e-44
IMGA|CT009490_19.5 KH, type 1 chr03_pseudomolecule_IMGAG_V2 1900... 172 2e-43
IMGA|CT009490_3.5 KH, type 1 chr03_pseudomolecule_IMGAG_V2 19011... 170 1e-42
IMGA|AC202336_1.4 KH, type 1 chr01_pseudomolecule_IMGAG_V2 49720... 141 4e-34
IMGA|AC157373_28.4 Calcium-binding protein. , related chr07_pse... 132 2e-31
IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition mot... 88 7e-18
IMGA|AC122724_34.5 KH, type 1 chr06_pseudomolecule_IMGAG_V2 1917... 54 1e-07
IMGA|AC148971_38.4 KH, type 1 chr02_pseudomolecule_IMGAG_V2 2052... 44 2e-04
IMGA|AC157757_20.5 KH, type 1 chr03_pseudomolecule_IMGAG_V2 3578... 43 3e-04
IMGA|AC148971_21.4 KH, type 1 chr02_pseudomolecule_IMGAG_V2 2050... 42 4e-04
IMGA|AC174339_28.4 KH, type 1 chr04_pseudomolecule_IMGAG_V2 2618... 42 5e-04
>IMGA|CU326394_10.4 KH, type 1 chr05_pseudomolecule_IMGAG_V2
1555351-1546296 E EGN_Mt071002 20080227
Length = 780
Score = 304 bits (778), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 146/159 (91%), Positives = 157/159 (98%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VGVLIGK+GDTIRYLQ NSGAKIQITRD DADPHS+TRPVELIGTLESI+KAEKLM+AVI
Sbjct: 196 VGVLIGKSGDTIRYLQYNSGAKIQITRDADADPHSSTRPVELIGTLESIDKAEKLMNAVI 255
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
AEADAGGSPALVARGLSPAQA+VGS+QIQ+QVPNEKVGLIIG+GGETIKSLQTK+GARIQ
Sbjct: 256 AEADAGGSPALVARGLSPAQAIVGSDQIQIQVPNEKVGLIIGKGGETIKSLQTKTGARIQ 315
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMSQ 159
LIPQHLPEGDDSKERTVQVTGDKRQIE+AQEMIKEV+SQ
Sbjct: 316 LIPQHLPEGDDSKERTVQVTGDKRQIEIAQEMIKEVLSQ 354
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 33/45 (73%), Gaps = 2/45 (4%)
Query: 80 QAVVGSEQI--QLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLI 122
Q + GS+ +++VP+ KVG++IG+ G+TI+ LQ SGA+IQ+
Sbjct: 177 QPISGSDTTTRKIEVPSNKVGVLIGKSGDTIRYLQYNSGAKIQIT 221
>IMGA|AC202336_9.4 KH, type 1 chr01_pseudomolecule_IMGAG_V2
4902542-4909333 E EGN_Mt071002 20080227
Length = 627
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/158 (55%), Positives = 121/158 (76%), Gaps = 4/158 (2%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VGV+IGK G+TI+YLQL SGAKIQ+TRD+DADP+S R VEL GT ++I AEKL+ V+
Sbjct: 123 VGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLIKEVL 182
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
AEA++GG+ LV R ++ G+++ +++PN KVGLIIG+GGETIKS+Q +GARIQ
Sbjct: 183 AEAESGGN-GLVTRRMT---GQGGADEFSMKIPNNKVGLIIGKGGETIKSMQATTGARIQ 238
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMS 158
+IP HLP GD S ERT+++ G QIE A++++ ++S
Sbjct: 239 VIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILS 276
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 89 QLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEV 148
++++PN +VG+IIG+GGETIK LQ +SGA+IQ+ + + +S R V++TG I
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVT-RDMDADPNSPNRLVELTGTSDAIAT 173
Query: 149 AQEMIKEVMSQ 159
A+++IKEV+++
Sbjct: 174 AEKLIKEVLAE 184
>IMGA|CT009490_19.5 KH, type 1 chr03_pseudomolecule_IMGAG_V2
19002786-18995714 E EGN_Mt071002 20080227
Length = 605
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 120/158 (75%), Gaps = 4/158 (2%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VGVLIGK G+TI+YLQ+ SGAKIQ+TRD+DADP+S TR VEL+GT +++ AEKL++ V+
Sbjct: 97 VGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVL 156
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
AEA+AG S R + A G ++ +Q+PN KVGLIIG+GGETIKS+Q +GARIQ
Sbjct: 157 AEAEAGASGGGTRRMV----AQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQ 212
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMS 158
+IP H P GD S ERT+++ G QIE A++++ ++++
Sbjct: 213 VIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILT 250
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 89 QLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEV 148
++++PN +VG++IG+GGETIK LQ +SGA+IQ+ + + +S+ R V++ G +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVT-RDMDADPNSQTRMVELMGTPDAVSS 147
Query: 149 AQEMIKEVMSQ 159
A+++I EV+++
Sbjct: 148 AEKLINEVLAE 158
>IMGA|CT009490_3.5 KH, type 1 chr03_pseudomolecule_IMGAG_V2
19011815-19007558 E EGN_Mt071002 20080227
Length = 605
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 119/158 (75%), Gaps = 4/158 (2%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VGVLIGK G+TI+YLQ+ SGAKIQ+TRD+DADP+S TR VEL+GT +++ AEKL++ V+
Sbjct: 97 VGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVL 156
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
AEA+AG S R + A G ++ +Q+PN KVGLIIG+GGETIK +Q +GARIQ
Sbjct: 157 AEAEAGASVGGTRRMV----AQSGGDEFVMQIPNNKVGLIIGKGGETIKGMQASTGARIQ 212
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMS 158
+IP H P GD S ERT+++ G QIE A++++ ++++
Sbjct: 213 VIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILT 250
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 89 QLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEV 148
++++PN +VG++IG+GGETIK LQ +SGA+IQ+ + + +S+ R V++ G +
Sbjct: 89 KIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVT-RDMDADPNSQTRMVELMGTPDAVSS 147
Query: 149 AQEMIKEVMSQ 159
A+++I EV+++
Sbjct: 148 AEKLINEVLAE 158
>IMGA|AC202336_1.4 KH, type 1 chr01_pseudomolecule_IMGAG_V2
4972076-4965883 E EGN_Mt071002 20080227
Length = 459
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 108/158 (68%), Gaps = 17/158 (10%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
VGV+IGK G+TI+YLQL SGAKIQ+TRD+DADP+S R VEL GT ++I AEKL+ V+
Sbjct: 123 VGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPNRLVELTGTSDAIATAEKLIKEVL 182
Query: 61 AEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQ 120
AEA++GG+ LV R ++ G+++ +++PN KS+Q +GARIQ
Sbjct: 183 AEAESGGN-GLVTRRMT---GQGGADEFSMKIPNN-------------KSMQATTGARIQ 225
Query: 121 LIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMS 158
+IP HLP GD S ERT+++ G QIE A++++ ++S
Sbjct: 226 VIPLHLPPGDTSTERTLKIEGTSEQIESAKQLVDSILS 263
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 89 QLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEV 148
++++PN +VG+IIG+GGETIK LQ +SGA+IQ+ + + +S R V++TG I
Sbjct: 115 KIEIPNGRVGVIIGKGGETIKYLQLQSGAKIQVT-RDMDADPNSPNRLVELTGTSDAIAT 173
Query: 149 AQEMIKEVMSQ 159
A+++IKEV+++
Sbjct: 174 AEKLIKEVLAE 184
>IMGA|AC157373_28.4 Calcium-binding protein. , related
chr07_pseudomolecule_IMGAG_V2 1627740-1619798 E
EGN_Mt071002 20080227
Length = 553
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/114 (63%), Positives = 83/114 (72%), Gaps = 26/114 (22%)
Query: 46 LESIEKAEKLMSAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGG 105
LESI+KAEKL++A+ AE D GGSP LVARGLSPAQA++GS+QIQ+QVPNEK
Sbjct: 149 LESIDKAEKLLNAMSAEDDDGGSPTLVARGLSPAQAIMGSDQIQIQVPNEK--------- 199
Query: 106 ETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMSQ 159
LIPQHLP DDSKERTVQVTGDKRQIE+AQEMIKE ++Q
Sbjct: 200 ---------------LIPQHLP--DDSKERTVQVTGDKRQIEIAQEMIKETLNQ 236
>IMGA|AC157373_30.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 1636778-1642537 E
EGN_Mt071002 20080227
Length = 541
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 51/60 (85%)
Query: 38 RPVELIGTLESIEKAEKLMSAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKV 97
+ L LESI+KAEKL++A+IAE DAGGSPA VARGLSPA A+VGS+QIQ+QVPNEK+
Sbjct: 65 KEFNLNDFLESIDKAEKLLNAMIAEDDAGGSPAFVARGLSPADAIVGSDQIQIQVPNEKM 124
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 39/51 (76%)
Query: 46 LESIEKAEKLMSAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEK 96
L SI + E LM+A+ EADAGGS AL+ R LSP Q +V S+QIQ+QVPNEK
Sbjct: 15 LGSIHEFENLMNAMFPEADAGGSLALLDRVLSPTQDIVESDQIQIQVPNEK 65
>IMGA|AC122724_34.5 KH, type 1 chr06_pseudomolecule_IMGAG_V2
1917378-1922370 E EGN_Mt071002 20080227
Length = 569
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 86/152 (56%), Gaps = 18/152 (11%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLE---SIEKAEKLMS 57
+G +IG+ G+ ++ L++ + AKI+I V P R V + + + +++ +KL+S
Sbjct: 58 IGSIIGRGGEIVKQLRVETKAKIRIGETV---PGCDERVVTVYSSSDETNTVDDGDKLVS 114
Query: 58 ----AVIAEADAGGSPALVARGLSPAQAVVGSEQI--QLQVPNEKVGLIIGRGGETIKSL 111
A+ D +VA L Q G Q+ +L VP++++G ++G+GG+ +++L
Sbjct: 115 PAEDALFKIHDR-----VVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNL 169
Query: 112 QTKSGARIQLI-PQHLPEGDDSKERTVQVTGD 142
++++GA+I+++ H+P + VQ++GD
Sbjct: 170 RSETGAQIRILKDDHVPACALRSDELVQISGD 201
>IMGA|AC148971_38.4 KH, type 1 chr02_pseudomolecule_IMGAG_V2
2052659-2057049 E EGN_Mt071002 20080227
Length = 533
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEK----AEKLM 56
+G +IGK G+ IR LQ +GA + + V R + + + ES E A+K
Sbjct: 109 IGGVIGKGGNIIRALQSETGATVSVGPSV---AECEDRLITITAS-ESPESRYSPAQKAT 164
Query: 57 SAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGETIKSLQTKSG 116
V + + G + GL+ +V QL V + +VG ++G+GG + ++ +G
Sbjct: 165 VLVFSRSVEAGIEKGIDSGLNTGSSVTA----QLVVSSNQVGCLLGKGGVIVSEMRKATG 220
Query: 117 ARIQLI-PQHLPEGDDSKERTVQVTGDKRQIEVAQEMIKEVMSQHRQHIPFHPLKRGG 173
A I+++ + + ++ VQ++G+ + Q+ + + R ++ LK G
Sbjct: 221 ASIRIVGTDKVSKCASDNDQVVQISGEFSNV---QDALYNATGRLRDNLFGGTLKSAG 275
>IMGA|AC157757_20.5 KH, type 1 chr03_pseudomolecule_IMGAG_V2
35789915-35794227 F EGN_Mt071002 20080227
Length = 662
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 88 IQLQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIP-QHLPEGDDSKERTVQVTGDKRQI 146
++L + + +VG I+G+GG IK + +SGA+I+++P + +P + VQ+TG +
Sbjct: 167 LRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILPKEEIPACASDSDELVQITGG---V 223
Query: 147 EVAQEMIKEVMSQHRQHIP 165
EV + ++ V Q ++ P
Sbjct: 224 EVVRRALQSVFQQLVENSP 242
>IMGA|AC148971_21.4 KH, type 1 chr02_pseudomolecule_IMGAG_V2
2050025-2050779 H EGN_Mt071002 20080227
Length = 222
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 73/161 (45%), Gaps = 28/161 (17%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITRDVDADPHSATRPVELIGTLESIEKAEKLMSAVI 60
+G +IGK+G I+ LQL +GAKI+I D+ S R + +IG A + V+
Sbjct: 59 IGGVIGKSGTVIKNLQLTTGAKIRIE---DSPNESPDRVIMVIG-------ASNIDGKVM 108
Query: 61 AEADAGGSPAL------------VARGLSPAQAVVGSE------QIQLQVPNEKVGLIIG 102
+ +G A+ R L A + G E +L + + G +IG
Sbjct: 109 VRSHSGDGEAIEVSKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGSVIG 168
Query: 103 RGGETIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTGDK 143
+GG+ ++ ++ +G +I + +LP S + ++ + +
Sbjct: 169 KGGKVVEKIKKDTGCKIWVCKDNLPACISSPDEVIECSASR 209
>IMGA|AC174339_28.4 KH, type 1 chr04_pseudomolecule_IMGAG_V2
26182947-26189545 E EGN_Mt071002 20080227
Length = 616
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 32/155 (20%)
Query: 1 VGVLIGKAGDTIRYLQLNSGAKIQITR--------------DVDADPHSATRPVELIGTL 46
+G IGK+G I+ LQ +GA+I+I +++ D + P E +
Sbjct: 31 IGAFIGKSGSVIKSLQQLTGARIRIDDAPVDCPERVIVVIVNLNGDGDVSLNPQEAL--- 87
Query: 47 ESIEKAEKLMSAVIAEADAGGSPALVARGLSPAQAVVGSEQIQLQVPNEKVGLIIGRGGE 106
++ E+++ AE+D G V +L V + G +IG+GG
Sbjct: 88 --LKVFERILDVAAAESDGNGVGDRVV-------------SCRLLVNAGQAGGVIGKGGM 132
Query: 107 TIKSLQTKSGARIQLIPQHLPEGDDSKERTVQVTG 141
+ ++ +G RI+++ LP + +++ G
Sbjct: 133 VVAKIRADTGCRIRVLNDKLPACTKPSDEIIEIQG 167