Miyakogusa Predicted Gene
- chr2.CM0018.160.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr2.CM0018.160.nd - phase: 0 /partial
(265 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition mot... 57 7e-09
IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition mot... 57 8e-09
IMGA|CT033766_5.5 U2 auxiliary factor small subunit chr05_pseudo... 51 6e-07
IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition mot... 50 9e-07
IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding p... 48 4e-06
IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition mot... 48 4e-06
IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition moti... 48 4e-06
IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition mot... 47 7e-06
IMGA|CR962130_8.4 RNA-binding region RNP-1 (RNA recognition moti... 46 2e-05
IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition mot... 46 2e-05
IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition moti... 45 2e-05
IMGA|AC149129_30.4 RNA-binding region RNP-1 (RNA recognition mot... 45 2e-05
IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 45 4e-05
IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis... 45 4e-05
IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition mot... 45 4e-05
IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition mot... 45 5e-05
IMGA|CT963115_17.5 RNA-binding region RNP-1 (RNA recognition mot... 44 6e-05
IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition mot... 43 1e-04
IMGA|AC202373_19.4 RNA-binding region RNP-1 (RNA recognition mot... 43 2e-04
IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition mot... 42 2e-04
IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition mot... 42 3e-04
IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition mot... 42 3e-04
IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition mot... 42 3e-04
IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition moti... 41 4e-04
IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition mot... 41 4e-04
IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition mot... 41 6e-04
IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1,... 40 8e-04
>IMGA|AC144459_24.5 RNA-binding region RNP-1 (RNA recognition
motif); HMG-I and HMG-Y, DNA-binding
chr05_pseudomolecule_IMGAG_V2 23848157-23844573 F
EGN_Mt071002 20080227
Length = 267
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 86 GGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEY 145
G GP + + +LV + DDL F +YG++ ++ + DRRTG +G+A + Y
Sbjct: 5 GRQGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRY 64
Query: 146 ERAEEAKNAIENLNGSELLTQNIYVDWAFSSGPINESI 183
+ A+EA A++ L+G + + I V +A GP E I
Sbjct: 65 KYADEASKAVDRLDGRMVDGREITVQFA-KYGPNAERI 101
>IMGA|AC137701_36.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 16974271-16978271 E
EGN_Mt071002 20080227
Length = 382
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 86 GGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEY 145
GG G + + W ++V + +A+E+++++AF G + + + TG KG+A +++
Sbjct: 273 GGEGAK--TQKWKLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKF 330
Query: 146 ERAEEAKNAIENLNGSELLTQNIYVDWA 173
++A+NAI LNGS+ ++ I VDWA
Sbjct: 331 TCKQDAENAIRKLNGSKFGSRLIAVDWA 358
>IMGA|CT033766_5.5 U2 auxiliary factor small subunit
chr05_pseudomolecule_IMGAG_V2 23709374-23707315 E
EGN_Mt071002 20080227
Length = 161
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V G+ + E D+ F +YGE+ +++L D+ TG KG+A I YE A++NL
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 159 NGSELLTQNIYVD 171
NG+++ + I VD
Sbjct: 98 NGAQVSGRIIRVD 110
>IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 39131449-39132842 F
EGN_Mt071002 20080227
Length = 292
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ VT + E+ +E DL F +G + +++ +D++TG +G+ + + E+A+ AI L
Sbjct: 213 VRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKL 272
Query: 159 NGSELLTQNIYVDWA 173
NG + V+WA
Sbjct: 273 NGYGYDNLILRVEWA 287
>IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding
protein, human types 1, 2, 3, 4
chr01_pseudomolecule_IMGAG_V2 6658115-6663331 F
EGN_Mt071002 20080227
Length = 647
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + E EDDL+N FG YG I + L D G K + + +E AE+A A+E L
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGFVNFENAEDAAKAVEAL 271
Query: 159 NGSELLTQNIYVDWA 173
NG ++ + YV A
Sbjct: 272 NGKKVDDKEWYVGKA 286
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I + + + L + F +G+I + + D +G KGY +++E + A+NAI+ L
Sbjct: 122 IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDSAQNAIDKL 180
Query: 159 NGSELLTQNIYV 170
NG + + ++V
Sbjct: 181 NGMLINDKQVFV 192
>IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 23874434-23871286 F
EGN_Mt071002 20080227
Length = 284
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 91 QRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEE 150
+ S++ + VTG+ E L+ AF +GE+ + + +D+ + KGYA IEY E
Sbjct: 186 EASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEA 245
Query: 151 AKNAIENLNGSELLTQNIYVDWAFSSGP 178
A A++ +NG + I VD A ++ P
Sbjct: 246 ASAALKEMNGKIINGWMIVVDVAKTTPP 273
>IMGA|AC146760_9.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22846699-22850069 E
EGN_Mt071002 20080227
Length = 248
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%)
Query: 89 GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERA 148
P++S +LV + + + +DL+ FG +G +K+++L D TG +G+ I++
Sbjct: 33 APRQSDLPTSLLVRNLRHDCRPEDLRRPFGHFGPLKDIYLPKDYYTGQPRGFGFIQFVDP 92
Query: 149 EEAKNAIENLNGSELLTQNIYVDWA 173
+A +A +++G LL + I V +A
Sbjct: 93 ADAADAKYHMDGQVLLGREITVVFA 117
>IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 29353518-29349911 E
EGN_Mt071002 20080227
Length = 420
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 23/147 (15%)
Query: 38 KLKSAITSGAAPSLSAPKKTKGRGFRQETDTNRNNRLSGSDFDSLTTEGGPGPQRSIEGW 97
++ S A + A K G++Q +N S SD DS T
Sbjct: 248 EMNGVFCSSRAMRIGAATPRKSSGYQQGGQSN--GTPSQSDTDSTNT------------- 292
Query: 98 IILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIEN 157
I V G+ A +DL+ F +YGEI ++ + + + GFV ++ A+ A++
Sbjct: 293 TIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFV------QFANRNNAEEALQK 346
Query: 158 LNGSELLTQNIYVDWAFSSGPINESIR 184
LNG+ + Q + + W P N+ R
Sbjct: 347 LNGTTVGKQTVRLSWG--RNPANKQFR 371
>IMGA|CR962130_8.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 9040273-9043083 E
EGN_Mt071002 20080227
Length = 327
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 96 GWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAI 155
G + VTG+ E DL+ F + G++ + L ++ RT +G+A + + AE+A I
Sbjct: 130 GDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI 189
Query: 156 ENLNGSELLTQNIYVDWAF 174
+ LN S L + I V+
Sbjct: 190 KYLNQSILEGRYITVERVL 208
>IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19467865-19466799 F
EGN_Mt071002 20080227
Length = 164
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G+ + L+ AF +YGEI + + DR TG +G+ + + + ++AIE +N
Sbjct: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
Query: 160 GSELLTQNIYVDWAFS 175
G ++ +NI V+ A S
Sbjct: 71 GQDMDGRNITVNEAQS 86
>IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 26182639-26180185 F
EGN_Mt071002 20080227
Length = 141
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ ++G+ ++ L AF +G++ + DR +G KG+A + Y EEA+ A E +
Sbjct: 37 LFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGM 96
Query: 159 NGSELLTQNIYVD 171
N L I+VD
Sbjct: 97 NAKFLDGWVIFVD 109
>IMGA|AC149129_30.4 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 19090202-19095517 E
EGN_Mt071002 20080227
Length = 824
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V G+ +EA E DL+ F + GEI + + ++ +T KG+AL+ +E E K A+ L
Sbjct: 196 VFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAEL 255
Query: 159 N 159
Sbjct: 256 K 256
>IMGA|AC135100_25.5 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29868882-29857777
E EGN_Mt071002 20080227
Length = 735
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V V A E+D++ F E+G + + L DR+TG +G I+Y +EEA AI L
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 159 NGSELL 164
+ L
Sbjct: 150 HNRHTL 155
>IMGA|AC174143_20.4 WW/Rsp5/WWP; Paraneoplastic encephalomyelitis
antigen chr08_pseudomolecule_IMGAG_V2 29672130-29683222
E EGN_Mt071002 20080227
Length = 735
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V V A E+D++ F E+G + + L DR+TG +G I+Y +EEA AI L
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 159 NGSELL 164
+ L
Sbjct: 150 HNRHTL 155
>IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19512181-19511124 F
EGN_Mt071002 20080227
Length = 161
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 100 LVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLN 159
V G+ + L+ AF +YGEI + + DR TG +G+ + + + +AIE +N
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 160 GSELLTQNIYVDWA 173
G +L +NI V+ A
Sbjct: 69 GQDLDGRNITVNQA 82
>IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19485092-19483974 E
EGN_Mt071002 20080227
Length = 190
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 113 LQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDW 172
L+ AF ++GEI + + DR TG +G+ + + + ++AIE +NG ++ +NI V+
Sbjct: 24 LEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMNGQDIDGRNITVNE 83
Query: 173 AFS 175
A S
Sbjct: 84 AQS 86
>IMGA|CT963115_17.5 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 18117613-18120511 F
EGN_Mt071002 20080227
Length = 170
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V G+ EE E L AF +G+IK++ LD+ T + + + + E+A A++N+
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 159 NGSELLTQNIYVDWAF 174
+G+EL + + V++A
Sbjct: 72 DGAELYGRVLTVNYAL 87
>IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 25794794-25795821 H
EGN_Mt071002 20080227
Length = 135
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 42/75 (56%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V G+ E L++AF +G++ + + D+ +G +G+ + + + AK+A + +
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 159 NGSELLTQNIYVDWA 173
+G LL + + +++A
Sbjct: 98 DGKALLGRPLRINFA 112
>IMGA|AC202373_19.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 35361221-35355148 E
EGN_Mt071002 20080227
Length = 595
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 109 QEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNI 168
Q D++ F + GE+ ++ + D F KG+ +E+ AE A++A+E +NG ELL + +
Sbjct: 352 QRSDIEKFFQDCGEVVDVRFSSDEEGRF-KGFGHVEFASAEAAQSALE-MNGQELLQRAV 409
Query: 169 YVDWAFSSG 177
+D A G
Sbjct: 410 RLDLARERG 418
>IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 23207650-23209533 F
EGN_Mt071002 20080227
Length = 146
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 92 RSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEA 151
R + + + G+ + L++AF YG++ + DR TG +G+ + + E A
Sbjct: 31 RHMSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESA 90
Query: 152 KNAIENLNGSELLTQNIYVDWA 173
+A+ +++G +L +NI V +A
Sbjct: 91 TSAL-SMDGQDLNGRNIRVSYA 111
>IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 23568765-23563374 E
EGN_Mt071002 20080227
Length = 486
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIE 156
I V G+ + L NAF +YGEI++ D+ +G KGY I ++R A+NA++
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALK 186
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIE 156
I ++ V E L F +GEI+ L LD+ TG KG+ L Y+ AE A+ A+E
Sbjct: 232 IYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>IMGA|AC150977_25.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 14333004-14330524 F
EGN_Mt071002 20080227
Length = 280
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 113 LQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTQNIYVDW 172
L++ FGE G++ + DR +G +G+ + + A+E +AI L+G++L + I V
Sbjct: 212 LESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGRAIRVSP 271
Query: 173 A 173
A
Sbjct: 272 A 272
>IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr07_pseudomolecule_IMGAG_V2 32027929-32025407 E
EGN_Mt071002 20080227
Length = 284
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 92 RSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEA 151
R G + + G+ + +DD++ G+I + L DR TG KGYA + Y+ E A
Sbjct: 99 RPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVA 158
Query: 152 KNAIENLNGSEL 163
+ AI++++ E
Sbjct: 159 QKAIDDIHNKEF 170
>IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 2878943-2880084 F
EGN_Mt071002 20080227
Length = 134
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I V G+ E+ L AF +YG + + L++ KG+ + + EEA+ A +
Sbjct: 34 IFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKAQIGM 93
Query: 159 NGSELLTQNIYVDW 172
NG L + +YVD
Sbjct: 94 NGKILHGRVLYVDM 107
>IMGA|AC136449_16.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 29317773-29312110 F
EGN_Mt071002 20080227
Length = 654
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
+ V + E +D+L+ FGE+G I + + D G K + + +E ++A A+E L
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEAL 273
Query: 159 NGSELLTQNIYVDWA 173
NG ++ + YV A
Sbjct: 274 NGKKIDDKEWYVGKA 288
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I + + + L + F +G I + + +D +G KGY ++++ E A+ AIE L
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 159 NGSELLTQNIYV 170
NG L + +YV
Sbjct: 183 NGMLLNDKQVYV 194
>IMGA|AC127168_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 28623498-28619047 F
EGN_Mt071002 20080227
Length = 454
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I V G+ + ++DL+ F ++G++ ++ + + + GFV+ L + + AEEA I+ L
Sbjct: 336 IFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGKGCGFVQ---LADRKNAEEA---IQGL 389
Query: 159 NGSELLTQNIYVDWAFSSG 177
NG+ + Q + + W S G
Sbjct: 390 NGTVIGKQTVRLSWGRSPG 408
>IMGA|AC122728_50.4 Polyadenylate binding protein, human types 1, 2,
3, 4 chr03_pseudomolecule_IMGAG_V2 29868052-29861846 E
EGN_Mt071002 20080227
Length = 414
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 99 ILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENL 158
I + + L + F +G I + + +D +G KGY +++E E A++AI+ L
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKL 172
Query: 159 NGSELLTQNIYVDWAFSSGPINESIRRKNARHPVMNLNIYFK 200
NG L + +YV G R NA N+Y K
Sbjct: 173 NGMLLNDKPVYV------GHFQRKQDRDNALSNAKFNNVYVK 208