Miyakogusa Predicted Gene

chr1.LjT43D18.20.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.LjT43D18.20.nd - phase: 0 
         (357 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC130200_12.4 Alba, DNA binding chr07_pseudomolecule_IMGAG_...   272   1e-73
IMGA|CU041253_30.4 Alba, DNA binding chr03_pseudomolecule_IMGAG_...   197   7e-51
IMGA|CU041253_21.4 Alba, DNA binding chr03_pseudomolecule_IMGAG_...   196   1e-50
IMGA|CU041253_32.4 Alba, DNA binding chr03_pseudomolecule_IMGAG_...    99   3e-21
IMGA|CU041253_31.4 Alba, DNA binding  chr03_pseudomolecule_IMGAG...    74   1e-13

>IMGA|AC130200_12.4 Alba, DNA binding chr07_pseudomolecule_IMGAG_V2
           11401755-11397006 H EGN_Mt071002 20080227
          Length = 364

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 136/158 (86%), Positives = 143/158 (90%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATSLLQEKNAREIVLKAMGQAISKT 60
           MDRYQKVEKPKPE+PINENEIRITTQGAIRNYITYATSLLQEK A+EIVLKAMGQAISKT
Sbjct: 1   MDRYQKVEKPKPETPINENEIRITTQGAIRNYITYATSLLQEKQAKEIVLKAMGQAISKT 60

Query: 61  VAIAEILKKRIPQLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSASELNKS 120
           VAIAEILKKRI  LHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLS  ELN +
Sbjct: 61  VAIAEILKKRISPLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSTGELNTN 120

Query: 121 SPGYQAPYDVEQPKQLSTYQQQPIKPARGPYNAINEDN 158
           SPGYQAP   EQ K  S YQQQP+KPA+  YNA+NED+
Sbjct: 121 SPGYQAPSTAEQSKPHSNYQQQPLKPAQDSYNAVNEDS 158


>IMGA|CU041253_30.4 Alba, DNA binding chr03_pseudomolecule_IMGAG_V2
           34560832-34565169 E EGN_Mt071002 20080227
          Length = 245

 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 95/142 (66%), Positives = 115/142 (80%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATSLLQEKNAREIVLKAMGQAISKT 60
           MDRYQ+VEKPK +SPINENEIRITTQG +RNYITYAT+L QEK   EIVLKAMG+AI+KT
Sbjct: 1   MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGTEEIVLKAMGRAINKT 60

Query: 61  VAIAEILKKRIPQLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSASELNKS 120
           V I E++K+RI  LHQ+T I S  ITD WEP+EEGL+P+E TRHVSMI+ITLS  EL+ S
Sbjct: 61  VTITELIKRRIVGLHQNTIIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SPGYQAPYDVEQPKQLSTYQQQ 142
           S GYQ P   +Q K L+ Y+++
Sbjct: 121 STGYQPPLPADQVKPLNEYEEE 142


>IMGA|CU041253_21.4 Alba, DNA binding chr03_pseudomolecule_IMGAG_V2
           34573916-34578538 E EGN_Mt071002 20080227
          Length = 245

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/142 (66%), Positives = 115/142 (80%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATSLLQEKNAREIVLKAMGQAISKT 60
           MDRYQ+VEKPK +SPINENEIRITTQG +RNYITYAT+L QEK + EIV+KAMG+AI+KT
Sbjct: 1   MDRYQRVEKPKADSPINENEIRITTQGRMRNYITYATTLFQEKGSDEIVVKAMGRAINKT 60

Query: 61  VAIAEILKKRIPQLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSASELNKS 120
           V I E++K+RI  LHQ+T I S  ITD WEP+EEGL+P+E TRHVSMI+ITLS  EL+ S
Sbjct: 61  VMITELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTS 120

Query: 121 SPGYQAPYDVEQPKQLSTYQQQ 142
           S GYQ P   +Q K L+ Y+ +
Sbjct: 121 STGYQPPLPADQVKPLNEYEDE 142


>IMGA|CU041253_32.4 Alba, DNA binding chr03_pseudomolecule_IMGAG_V2
           34567317-34569761 E EGN_Mt071002 20080227
          Length = 224

 Score = 99.0 bits (245), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 57/71 (80%)

Query: 53  MGQAISKTVAIAEILKKRIPQLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITL 112
           MG+AI+KTV I E++K+RI  LHQ+T + S  ITD WEP+EEGL+P+E TRHVSMI+ITL
Sbjct: 1   MGRAINKTVMITELIKRRIVGLHQNTQVGSTDITDTWEPLEEGLLPLETTRHVSMITITL 60

Query: 113 SASELNKSSPG 123
           S  EL+ SS G
Sbjct: 61  SKKELDTSSTG 71


>IMGA|CU041253_31.4 Alba, DNA binding
          chr03_pseudomolecule_IMGAG_V2 34566276-34567155 E
          EGN_Mt071002 20080227
          Length = 60

 Score = 73.6 bits (179), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/41 (80%), Positives = 37/41 (90%)

Query: 1  MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATSLLQ 41
          MDRYQ+VEKPK + PINENEIRITTQG +RNYITYAT+L Q
Sbjct: 1  MDRYQRVEKPKADGPINENEIRITTQGRMRNYITYATTLFQ 41