Miyakogusa Predicted Gene

chr1.LjT38A19.110.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.LjT38A19.110.nc - phase: 0 
         (142 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC186676_6.5 Late embryogenesis abundant (LEA) group 1 chr0...   128   8e-31
IMGA|AC186676_10.5 Late embryogenesis abundant (LEA) group 1 chr...   107   2e-24
IMGA|AC186676_26.5 Late embryogenesis abundant (LEA) group 1 chr...   106   3e-24

>IMGA|AC186676_6.5 Late embryogenesis abundant (LEA) group 1
           chr07_pseudomolecule_IMGAG_V2 21696134-21697449 F
           EGN_Mt071002 20080227
          Length = 177

 Score =  128 bits (322), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/128 (59%), Positives = 82/128 (64%), Gaps = 7/128 (5%)

Query: 1   MQGAKKATETMKETAANIGASAKSGKEKTKATVQEKAEKVTAGDPVQKEMATQKKEAKVS 60
           MQGAKKA ET+KETAANIGASAKSG EKTKAT+QEK EK+TA DPVQKEMAT KKEAK++
Sbjct: 1   MQGAKKAGETIKETAANIGASAKSGMEKTKATLQEKTEKMTARDPVQKEMATHKKEAKMN 60

Query: 61  QAELDKLAAREHNXXXXXXXXXXXX-------XXXXXXXXXXXXXXXXXXXQPMGAHQTS 113
           QAELDKLAAREHN                                       P GAHQ S
Sbjct: 61  QAELDKLAAREHNAAVKQTTTAAAGHMGQPHHTTGTTGTGTATYSTTGNYGHPTGAHQMS 120

Query: 114 ALPGHGTG 121
           A+PGHGTG
Sbjct: 121 AMPGHGTG 128


>IMGA|AC186676_10.5 Late embryogenesis abundant (LEA) group 1
          chr07_pseudomolecule_IMGAG_V2 21706435-21707816 F
          EGN_Mt071002 20080227
          Length = 105

 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 64/71 (90%)

Query: 3  GAKKATETMKETAANIGASAKSGKEKTKATVQEKAEKVTAGDPVQKEMATQKKEAKVSQA 62
          GAKK  E++KETAANIGASAKSG EKTKAT+QEK EK+TA DP+QKEMATQKKE +V+QA
Sbjct: 4  GAKKTGESIKETAANIGASAKSGMEKTKATLQEKTEKMTAHDPLQKEMATQKKEERVNQA 63

Query: 63 ELDKLAAREHN 73
          ELDK AAREHN
Sbjct: 64 ELDKEAAREHN 74


>IMGA|AC186676_26.5 Late embryogenesis abundant (LEA) group 1
          chr07_pseudomolecule_IMGAG_V2 21700694-21702187 F
          EGN_Mt071002 20080227
          Length = 101

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/71 (80%), Positives = 63/71 (88%)

Query: 3  GAKKATETMKETAANIGASAKSGKEKTKATVQEKAEKVTAGDPVQKEMATQKKEAKVSQA 62
          GAKK  E++KETAANIGASAKSG EKTKAT QEK EK+TA DP+QKEMATQKKE +V+QA
Sbjct: 4  GAKKTGESIKETAANIGASAKSGMEKTKATFQEKTEKMTAHDPLQKEMATQKKEERVNQA 63

Query: 63 ELDKLAAREHN 73
          ELDK AAREHN
Sbjct: 64 ELDKEAAREHN 74