Miyakogusa Predicted Gene
- chr1.LjT35H06.190.nc
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.LjT35H06.190.nc - phase: 0 /partial
(244 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC174314_23.4 Trp repressor/replication initiator chr04_pse... 308 1e-84
IMGA|AC148758_35.4 Protein of unknown function DUF668 chr04_pseu... 307 2e-84
IMGA|AC137065_39.4 Protein of unknown function DUF668 chr03_pseu... 144 4e-35
IMGA|AC174321_6.4 Protein of unknown function DUF668 chr01_pseud... 140 5e-34
IMGA|AC146788_4.4 Protein of unknown function DUF668 chr01_pseud... 48 3e-06
IMGA|AC171778_35.4 Protein of unknown function DUF668 chr00_pseu... 43 1e-04
IMGA|CR974443_5.5 Protein of unknown function DUF668 chr03_pseud... 42 2e-04
>IMGA|AC174314_23.4 Trp repressor/replication initiator
chr04_pseudomolecule_IMGAG_V2 34185572-34178919 H
EGN_Mt071002 20080227
Length = 637
Score = 308 bits (789), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/246 (65%), Positives = 196/246 (79%), Gaps = 3/246 (1%)
Query: 1 VARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIA 60
VARSS+MP+N RDTLYQSLPPNIK LRSKLP+F V EELTVADIK+EMEKTL WLVPIA
Sbjct: 390 VARSSSMPANTRDTLYQSLPPNIKLTLRSKLPTFHVAEELTVADIKQEMEKTLHWLVPIA 449
Query: 61 TNTSKAHHGFGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQRL 120
TNT+KAHHGFGWVGEWA+TGS+ N+K+++T +MRIETFHHADK KVE YI++LLLWL RL
Sbjct: 450 TNTAKAHHGFGWVGEWASTGSDLNKKSMKTEVMRIETFHHADKEKVENYILELLLWLHRL 509
Query: 121 AIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTNALSPILTIDEQTMLQDVSKKALIKGI 180
A+K KAG D G+VKS +KS GT +KTNK+STNA+SP+LT DEQ ML+DV+ K ++GI
Sbjct: 510 AVKSKAGGDVGEVKSVIKSHVGTVLQKTNKQSTNAVSPLLTTDEQIMLKDVNNKIPVRGI 569
Query: 181 --SKSMDFDSLRSRLRENYRX-XXXXXXXXXXXXXXXFNRILSKLPVIDFDIDKERALNV 237
SKS+DFDSL+ L +N + FN+I SK+P IDF IDK+RAL+V
Sbjct: 570 SKSKSLDFDSLKMELTDNSKLIKSSSYSTTSRSKELSFNKIHSKVPAIDFCIDKKRALDV 629
Query: 238 IDRLDV 243
IDR++V
Sbjct: 630 IDRVNV 635
>IMGA|AC148758_35.4 Protein of unknown function DUF668
chr04_pseudomolecule_IMGAG_V2 34277574-34280844 H
EGN_Mt071002 20080227
Length = 371
Score = 307 bits (787), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/246 (65%), Positives = 196/246 (79%), Gaps = 3/246 (1%)
Query: 1 VARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIA 60
VARSS+MP+N RDTLYQSLPPNIK LRSKLP+F V EELTVADIK+EMEKTL WLVPIA
Sbjct: 124 VARSSSMPANTRDTLYQSLPPNIKLTLRSKLPTFHVAEELTVADIKQEMEKTLHWLVPIA 183
Query: 61 TNTSKAHHGFGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQRL 120
TNT+KAHHGFGWVGEWA+TGS+ N+K+++T +MRIETFHHADK KVE YI++LLLWL RL
Sbjct: 184 TNTAKAHHGFGWVGEWASTGSDLNKKSMKTEVMRIETFHHADKEKVENYILELLLWLHRL 243
Query: 121 AIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTNALSPILTIDEQTMLQDVSKKALIKGI 180
A+K KAG D G+VKS +KS GT +KTNK+STNA+SP+LT DEQ ML+DV+ K ++GI
Sbjct: 244 AVKSKAGGDVGEVKSVIKSHVGTVLQKTNKQSTNAVSPLLTTDEQIMLKDVNNKIPVRGI 303
Query: 181 --SKSMDFDSLRSRLRENYRX-XXXXXXXXXXXXXXXFNRILSKLPVIDFDIDKERALNV 237
SKS+DFDSL+ L +N + FN+I SK+P IDF IDK+RAL+V
Sbjct: 304 SKSKSLDFDSLKMELTDNSKLIKSSSYSTTSRSKELSFNKIHSKVPAIDFCIDKKRALDV 363
Query: 238 IDRLDV 243
IDR++V
Sbjct: 364 IDRVNV 369
>IMGA|AC137065_39.4 Protein of unknown function DUF668
chr03_pseudomolecule_IMGAG_V2 35997956-35992162 E
EGN_Mt071002 20080227
Length = 608
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 123/206 (59%), Gaps = 20/206 (9%)
Query: 1 VARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIA 60
+R +++P N RDTLYQ LP +IKSAL S+L S + +E +V IK EM KTLQWLVP A
Sbjct: 363 ASRPASLPPNTRDTLYQGLPNSIKSALPSRLQSISIQKEHSVTHIKAEMNKTLQWLVPFA 422
Query: 61 TNTSKAHHGFGWVGEWANTGSE-ANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQR 119
NT KAH GFGWVGEWANT ++ + ++ +R++T ++ADK K++ YI++LL+W+
Sbjct: 423 ANTIKAHQGFGWVGEWANTSNDFGDNTTKESNPIRLQTLYYADKQKIDVYIIELLVWIHH 482
Query: 120 LAIKIKAGSDAGK-VKSPMKSSAGTTSE--------------KTNKESTNALSPILTIDE 164
L +++ +A + + P++SS E + NK LSP ++
Sbjct: 483 LISSVRSRQNASRPMAMPIRSSPPKRPELQSKMRQFLILSLDRNNKPLGTQLSP----ED 538
Query: 165 QTMLQDVSKKALIKGISKSMDFDSLR 190
+ +L++V + GISKS + + +
Sbjct: 539 RILLEEVMTRRRSPGISKSEELGAAK 564
>IMGA|AC174321_6.4 Protein of unknown function DUF668
chr01_pseudomolecule_IMGAG_V2 8857598-8851250 E
EGN_Mt071002 20080227
Length = 594
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 121/189 (64%), Gaps = 9/189 (4%)
Query: 1 VARSSAMPSNLRDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIA 60
+R + +P N+RDTLY+ LP NIK+AL S+L + V++EL++A +K EM+K L WL P A
Sbjct: 368 ASRPTILPPNMRDTLYKGLPNNIKNALPSRLQNDDVMKELSIAQVKVEMDKILPWLTPFA 427
Query: 61 TNTSKAHHGFGWVGEWANTGSEANR--KAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQ 118
TNT+KAH GFGWVGEWAN +E ++ +R+ T H+A+K K++++I++LL+ L
Sbjct: 428 TNTTKAHQGFGWVGEWANASNEFGEMTSGKESNHIRLHTLHYAEKQKIDFHILELLVRLH 487
Query: 119 RLAIKIKAGSDAGKVKSPMKSSAGTTSEKTNKESTNALSPI----LTIDEQTMLQDVSKK 174
+L ++ +A + PM S+ ++ K + L I L+ +++ +L++V+ +
Sbjct: 488 QLVTFVRYRPNATR---PMSSTRTSSPNKGLHFQSKMLQFISLSKLSEEDRRLLEEVTTR 544
Query: 175 ALIKGISKS 183
I GISKS
Sbjct: 545 KWIPGISKS 553
>IMGA|AC146788_4.4 Protein of unknown function DUF668
chr01_pseudomolecule_IMGAG_V2 14831581-14833334 E
EGN_Mt071002 20080227
Length = 529
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 3 RSSAMPSNLRDTLYQSLPPNIKSALRSKLPSF---RVVEELTVADIKEEMEKTLQWLVPI 59
R++ + RD LY LP I++ALR KL + ++ E V +++ L+WL P+
Sbjct: 411 RTNTIDVRTRDDLYNKLPTTIRTALRGKLKWYAKSKLETEWNVV-----LKQILEWLAPL 465
Query: 60 ATNTSKAHHGFGWVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWLQR 119
A N K W E E +++ ++ ++T + A++ K E +V+LL+ L
Sbjct: 466 AHNMVK------WYSE---RNFEKEYTSLKANVLLVQTLYFANQAKTEAAMVELLVGLHY 516
Query: 120 LA 121
+
Sbjct: 517 VC 518
>IMGA|AC171778_35.4 Protein of unknown function DUF668
chr00_pseudomolecule_IMGAG_V2 8390578-8393494 E
EGN_Mt071002 20080227
Length = 583
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 12 RDTLYQSLPPNIKSALRSKLPSFRVVEELTVADIKEEMEKTLQWLVPIATNTSKAHHGFG 71
RD LY LP + ++LR+ LP EE + E M L+WL P+ AH+
Sbjct: 466 RDDLYNMLPRRVTASLRTSLP-----EEWS-----EAMTXILEWLAPL------AHNMLR 509
Query: 72 WVGEWANTGSEANRKAVQTGIMRIETFHHADKGKVEYYIVDLLLWL 117
W E E +T ++ ++T + A + K E I +LL+ L
Sbjct: 510 WXSE---RSYEQLSFVSRTXVLLVQTLYFASQEKTEAIITELLVGL 552
>IMGA|CR974443_5.5 Protein of unknown function DUF668
chr03_pseudomolecule_IMGAG_V2 26614804-26618126 E
EGN_Mt071002 20080227
Length = 592
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 12 RDTLYQSLPPNIKSALRSKL-PSFRVVEELTVADI------KEEMEKTLQWLVPIATNTS 64
RD LY LP ++ AL++KL P + + +V D E M L+WL P+A N
Sbjct: 457 RDDLYNMLPRRVRIALKAKLKPYTKTMASASVFDTGLAGEWNEAMSSILEWLAPLAHNMI 516
Query: 65 KAHHGFGWVGEWANTGSEANRKAV-QTGIMRIETFHHADKGKVEYYIVDLLLWLQRLA 121
+ W S + V +T ++ ++T + A+ K E I +LL+ L +
Sbjct: 517 R----------WQTERSFEQQSFVSRTNVLLVQTLYFANLEKTEEIITELLVGLNYVC 564