Miyakogusa Predicted Gene

chr1.CM0760.80.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0760.80.nc - phase: 0 
         (604 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC125368_17.5 BRCT; Pescadillo, N-terminal chr07_pseudomole...   957   0.0  

>IMGA|AC125368_17.5 BRCT; Pescadillo, N-terminal
           chr07_pseudomolecule_IMGAG_V2 26150266-26146140 F
           EGN_Mt071002 20080227
          Length = 609

 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/606 (77%), Positives = 529/606 (87%), Gaps = 3/606 (0%)

Query: 1   MVKHYRPAGKKKEGNAAKFVTRSQALKQLQITLPLFRKLCILKGVTPREPKKKFKGNHHT 60
           + KHYRPAGKKKEGNAAKFVTR+QALKQLQI+LPLFRKLCILKGVTPREPKKKFKGN  T
Sbjct: 2   VAKHYRPAGKKKEGNAAKFVTRTQALKQLQISLPLFRKLCILKGVTPREPKKKFKGNDKT 61

Query: 61  YYHVKDVSFLHHEPLLEIHRAIRVHEKKIKKAEAKQNIERANRLREKTPKPKVDRIIRQR 120
           YYHVKD+SFLHHEPL+EIHRAIRVHE+KIKKAEAK+N+ERANRLREKTPKPK+DRIIRQR
Sbjct: 62  YYHVKDISFLHHEPLVEIHRAIRVHERKIKKAEAKKNVERANRLREKTPKPKIDRIIRQR 121

Query: 121 YPRFVDALGELDDCLTMVHLFAALPASERTKIEVERVHKCRRLAHEWQAFISRKHKLRKT 180
           YPRFVDALGELDDCLTMVHLFAA+PA+E  KI+VE VHKCRRLAHEWQAF+SR HKLRKT
Sbjct: 122 YPRFVDALGELDDCLTMVHLFAAVPATESKKIDVELVHKCRRLAHEWQAFVSRTHKLRKT 181

Query: 181 FVSVKGIYYQAEVEGQTVTWLSPHSLQQVVPDDVDIVTMLSFLQLYEPLLSFVNFRLYHS 240
           FVSVKGIYYQAEVEGQ +TWL+PHSLQQVV +DVDI TML+FLQLYEPLL FVNF LYHS
Sbjct: 182 FVSVKGIYYQAEVEGQKITWLTPHSLQQVVSEDVDIPTMLNFLQLYEPLLCFVNFHLYHS 241

Query: 241 INLKYPPILDPQLEALAADLYALSRYANADPKPSVLNSEASLLAGSEQVESKQNRAVTEK 300
           INLKYPP+LDP+LEALAAD+YALSRY N + +P++LNSE S L  SEQ+ESKQ+ A T+ 
Sbjct: 242 INLKYPPMLDPRLEALAADIYALSRYLNGNTRPAILNSETSQLVESEQLESKQDGAQTQN 301

Query: 301 EHSELRLAQLQHQLPSNEPGALMQLVDKVAGEEVEE-DHDTRECKNLFKNMKFFLSREVP 359
           E SELRLAQLQHQLPSNEPGALMQLV+KVAGE  EE D +TRECKNLF+N+K FLSRE P
Sbjct: 302 EKSELRLAQLQHQLPSNEPGALMQLVEKVAGEGEEEYDQETRECKNLFRNVKIFLSREAP 361

Query: 360 RESLLFVIPAFGGTVSWEGKGAPFGESDDSITHQIVDREAQGHRFLSREYVQPQWVYDSV 419
           RESLLFVIPAFGGTVSWEG+GAPF ESD SITHQIVDRE+QGHRFLSREYVQPQWV+D V
Sbjct: 362 RESLLFVIPAFGGTVSWEGEGAPFAESDQSITHQIVDRESQGHRFLSREYVQPQWVFDCV 421

Query: 420 NARVILPTEKYMVGRIPPPHLSPFVNYDEGAYVPDYAKIIKQLQAAAEKEVLPLPGIGKE 479
           NAR+ILPT+ Y VGRIPPPHLSPFV+YDEGAYVP+YAK +K LQAAA KEVLPLPG  K 
Sbjct: 422 NARIILPTDNYFVGRIPPPHLSPFVDYDEGAYVPEYAKTLKHLQAAARKEVLPLPGAEK- 480

Query: 480 DLEDPQNLLAEGMIDRVEANEAAKRKQKMMILEQQYHDDLKKELKGVTHTSAGSDVEKET 539
           DLEDPQNLLAEG+IDR  ANEAA++KQK+M  EQ++ ++LKKELKG T+TSAGS VEKET
Sbjct: 481 DLEDPQNLLAEGIIDRAAANEAAEKKQKLMKQEQRFREELKKELKGETYTSAGSAVEKET 540

Query: 540 SGGE-QTVEPATKVQENVDDTADXXXXXXXXXXXXXXEAMQISNKRKQDQTALLKQRRKR 598
           S    +T E    VQ N DD A+              EAMQISN+RK+++   + +R+K+
Sbjct: 541 STAVIETGESTNNVQANTDDGAEMGKLLLSRRKRKLLEAMQISNERKKNKHDTIIKRKKK 600

Query: 599 LDEAQS 604
           LDEAQ+
Sbjct: 601 LDEAQN 606