Miyakogusa Predicted Gene

chr1.CM0760.160.nd
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0760.160.nd + phase: 0 
         (323 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CT009545_3.5 M355  chr03_pseudomolecule_IMGAG_V2 30315723-3...   125   2e-29
IMGA|CT009545_9.5 M355  chr03_pseudomolecule_IMGAG_V2 30306428-3...   117   7e-27

>IMGA|CT009545_3.5 M355  chr03_pseudomolecule_IMGAG_V2
           30315723-30312265 F EGN_Mt071002 20080227
          Length = 316

 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/330 (33%), Positives = 121/330 (36%), Gaps = 21/330 (6%)

Query: 1   MVGGGSRRDEGSLVLNNTNVFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPQMFW 60
           MVGGGSRRDEGSLV++NTNVFAA                                 Q FW
Sbjct: 1   MVGGGSRRDEGSLVISNTNVFAALDTLKKKKKSDKDKKNKGSSKSTKSESES----QAFW 56

Query: 61  APAPLNATSWAXXXXXXX-YYATTAPPQSVWGVSEPHHSKXX-XXXXXXXXXXXXXXXXX 118
           APAPLNATSWA        YY TTAPPQ     S+P  S+                    
Sbjct: 57  APAPLNATSWADVDDDDDDYYLTTAPPQ----FSDPQPSEDKPEHFEDTESEEDILDDGD 112

Query: 119 XXXXXXXXXXXXXXSVKPEPEVKKHAEVSAPPPLPPKETXXXXXXXXXXXXXXXXXXXXX 178
                         +VK EPEVKKHAEV    P+ PKE                      
Sbjct: 113 EEEEEQDHEPEPEHAVKTEPEVKKHAEV----PVMPKEAERQLSKKERKKKELEELEALL 168

Query: 179 XDFGVAPKESTDG--QDETQGAPQXXXXXXXXXXXXXXXTTXXXXXXXXXXXXXXXXXXX 236
            DFGV  KES DG  QDE+QG PQ                                    
Sbjct: 169 ADFGVTQKESNDGQSQDESQGVPQDKKGVEGDVDGEKKEIA--PESKNAKKKKKKDKASK 226

Query: 237 EVKESQDQPNSSDTNNGPDLA---ENPEEDASTVDVXXXXXXXXXXXXXXXXXXXXXXXX 293
           EVKE+   PNSS+TNNGPD+A   EN EED S VDV                        
Sbjct: 227 EVKEANGHPNSSETNNGPDMATGTENSEEDLSVVDVKERLKKVASMKKKKSSKEMDAAAR 286

Query: 294 XXXXXXXXXXXXXXXXXXXXXNHYNQQPVR 323
                                NHYNQQPVR
Sbjct: 287 AAAQEAAARNARLAASKKKEKNHYNQQPVR 316


>IMGA|CT009545_9.5 M355  chr03_pseudomolecule_IMGAG_V2
           30306428-30303953 F EGN_Mt071002 20080227
          Length = 307

 Score =  117 bits (293), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 115/326 (35%), Gaps = 22/326 (6%)

Query: 1   MVGGGSRRDEGSLVLNNTNVFAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPQMFW 60
           MVGGGSRRDEGSLV++NTNVFAA                                 Q FW
Sbjct: 1   MVGGGSRRDEGSLVISNTNVFAALDTLKKKKKSDKDKKNKGSSKSTKSESES----QAFW 56

Query: 61  APAPLNATSWA-XXXXXXXYYATTAPPQSVWGVSEPHHSKXXXXXXXXXXXXXXXXXXXX 119
           APAPLNATSWA        YY TTAPPQ  +   +P   K                    
Sbjct: 57  APAPLNATSWADVDDDDDDYYLTTAPPQ--FSDPQPSEDKPEHFEESESEEDILDEGDEE 114

Query: 120 XXXXXXXXXXXXXSVKPEPEVKKHAEVSAPPPLPPKETXXXXXXXXXXXXXXXXXXXXXX 179
                        +VKPEPEVKK+AEV    P  PKE                       
Sbjct: 115 VEEEQDHESEPEYTVKPEPEVKKNAEV----PAAPKEAERQLSKKERKKKELEELEALLA 170

Query: 180 DFGVAPKESTD--GQDETQGAPQXXXXXXXXXXXXXXXTTXXXXXXXXXXXXXXXXXXXE 237
           DFGV   E+ D  GQDE+QGAPQ                T                   E
Sbjct: 171 DFGVTQNENNDGQGQDESQGAPQDKKGVDGDVDGEKKEIT--AESKNAKKKKRKDKASKE 228

Query: 238 VKESQDQPNSSDTNNGPDLAENPEEDASTVDVXXXXXXXXXXXXXXXXXXXXXXXXXXXX 297
           VKES  QPNSSD        EN EED+S VDV                            
Sbjct: 229 VKESNGQPNSSDV-------ENAEEDSSVVDVKERLKKVASMRKKKSSKEMDAAARAAAQ 281

Query: 298 XXXXXXXXXXXXXXXXXNHYNQQPVR 323
                            NHYNQQPVR
Sbjct: 282 EAAARNARLAAAKKKEKNHYNQQPVR 307