Miyakogusa Predicted Gene

chr1.CM0433.310.nd

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0433.310.nd + phase: 2 /pseudo/partial
         (475 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CU019603_5.4 Tudor  chr03_pseudomolecule_IMGAG_V2 19991467-...   175   4e-44
IMGA|AC160629_11.5 Tudor , related chr01_pseudomolecule_IMGAG_V2...   164   9e-41
IMGA|AC149032_40.5 HEAT  chr02_pseudomolecule_IMGAG_V2 7265361-7...    80   2e-15
IMGA|AC174319_32.5 T24D18.4 , related chr04_pseudomolecule_IMGAG...    75   4e-14
IMGA|AC163383_16.4 DNA mismatch repair protein MutS, C-terminal;...    55   8e-08

>IMGA|CU019603_5.4 Tudor  chr03_pseudomolecule_IMGAG_V2
           19991467-19985174 H EGN_Mt071002 20080227
          Length = 777

 Score =  175 bits (443), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 103/219 (47%), Positives = 133/219 (60%), Gaps = 41/219 (18%)

Query: 2   SEAKPARRSVKKALGRNSDVKDTTVADLVKKGSGAASDVDAKKNSAKKLGEHKSDINAKK 61
           S+AKP ++ V+K LG+NS VK T   D  KK SG+AS  DAKK                 
Sbjct: 388 SKAKPVKQPVRKVLGQNSGVKKTAGTDSGKKQSGSASGADAKK----------------- 430

Query: 62  HSAKKLDEQKGGSGSSSRKLENNKKSGRGKANSEAAVAKSSAIDVDKEMTVYSPRSGTKS 121
           HS KKLD+ +GG GSSSR+L + KK G+                   E  V SPRS  KS
Sbjct: 431 HSVKKLDDNEGGGGSSSRQLVDKKKRGQ-------------------EEMVSSPRSDIKS 471

Query: 122 TKSENTEEIPLTSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVN 181
           ++ E  EE  +T+ KRK   G++ ESD  ++ +NLVG+R++VWWP+DR+    FY GV+ 
Sbjct: 472 SEDEKLEETTMTNGKRKHASGRKNESDIMEHDQNLVGVRLEVWWPKDRQ----FYKGVIE 527

Query: 182 SFDSARKKHKVLYDDGDEETLNLREEKWGVIKKADSDAD 220
           SFDS +KKHKV+YDDG+ E LNL  EKW VI +ADSDAD
Sbjct: 528 SFDSRKKKHKVVYDDGEVEVLNLAREKWNVI-EADSDAD 565


>IMGA|AC160629_11.5 Tudor , related chr01_pseudomolecule_IMGAG_V2
           4185113-4194805 E EGN_Mt071002 20080227
          Length = 938

 Score =  164 bits (414), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 131/205 (63%), Gaps = 14/205 (6%)

Query: 18  NSDVKDTTVADLVKKGSGAASDVDAK--KNSAKKLGEHKSDINAKKHSAKKLDEQKGGSG 75
           +S  K+    D+ KK S   SD   K  + SAKK     SD+    H+           G
Sbjct: 522 DSSAKEVAAEDISKKVSEGTSDSKVKPARPSAKKGPIRSSDVKTVVHAVM------ADVG 575

Query: 76  SSSRKLENNKKSGRGKANSEAAVAKSSAIDVDKEMTVYSPRSGTKSTKSENTEEIPLTSA 135
           SSS K E+ KK    K +SE  +AKSSA D DK +TV S +S TK+TK E++EE P T+ 
Sbjct: 576 SSSLKPEDKKKKTHVKGSSEKGLAKSSAEDEDK-VTVSSLKSATKTTKDEHSEETPKTTL 634

Query: 136 KRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYD 195
           KRKRTPGKEK SDTKK  ++LVG RVKVWWP+D      FY GVV+SFDS+ KKHKVLYD
Sbjct: 635 KRKRTPGKEKGSDTKKNDQSLVGKRVKVWWPDDN----MFYKGVVDSFDSSTKKHKVLYD 690

Query: 196 DGDEETLNLREEKWGVIKKADSDAD 220
           DGDEE LN +EEK+ ++ + D+DAD
Sbjct: 691 DGDEEILNFKEEKYEIV-EVDADAD 714


>IMGA|AC149032_40.5 HEAT  chr02_pseudomolecule_IMGAG_V2
           7265361-7271462 E EGN_Mt071002 20080227
          Length = 802

 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 15/80 (18%)

Query: 143 KEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETL 202
           KE ESD     E+L+G RVKVWWP D+    +FY G V S+DS+++KH +LYDDG+ E L
Sbjct: 477 KEGESD----AEDLIGCRVKVWWPLDK----KFYKGTVQSYDSSKRKHAILYDDGEVEKL 528

Query: 203 NLREEKWGVIKKADSDADGG 222
            L +E+W +I       DGG
Sbjct: 529 CLEKERWELI-------DGG 541


>IMGA|AC174319_32.5 T24D18.4 , related chr04_pseudomolecule_IMGAG_V2
           552630-557546 E EGN_Mt071002 20080227
          Length = 835

 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 5/99 (5%)

Query: 133 TSAKRKRTPGKEKESDTKKYGENLVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKV 192
           TS K       +K  +++  G +LVG R+KVWWP D+     +Y G V+++D    KHKV
Sbjct: 739 TSDKGVNKSSAKKAQESEDLGNSLVGKRIKVWWPLDK----TYYEGAVSAYDHVNGKHKV 794

Query: 193 LYDDGDEETLNLREEKWGVIKKADSDADGGHQRRKENQA 231
           LYDDG EE +NL++ +W  +   +   D G ++R+++Q 
Sbjct: 795 LYDDGVEEQINLKKHRWE-LADVNVSPDKGRKKRRKSQV 832


>IMGA|AC163383_16.4 DNA mismatch repair protein MutS, C-terminal;
           Tudor chr07_pseudomolecule_IMGAG_V2 29644480-29652501 E
           EGN_Mt071002 20080227
          Length = 1277

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 156 LVGLRVKVWWPEDREIFYRFYTGVVNSFDSARKKHKVLYDDGDEETLNLREEKWGVIKKA 215
            +G R++V+WP D      +Y G V SFD+   KH++ YDD +EE+++L +EK   I+ +
Sbjct: 90  FIGKRIRVYWPLDEA----WYEGTVKSFDTVTSKHRIRYDDDEEESIDLSKEKIEWIQDS 145

Query: 216 DS 217
            S
Sbjct: 146 SS 147