Miyakogusa Predicted Gene

chr1.CM0410.180.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0410.180.nc + phase: 0 
         (404 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|CT573052_24.5 Protein of unknown function DUF1675 chr05_pse...   125   4e-29
IMGA|CU179636_10.3 ABRC5  chr03_pseudomolecule_IMGAG_V2 36254730...   100   2e-21
IMGA|AC144473_21.5 hypothetical protein chr06_pseudomolecule_IMG...    58   9e-09

>IMGA|CT573052_24.5 Protein of unknown function DUF1675
           chr05_pseudomolecule_IMGAG_V2 18310606-18315334 E
           EGN_Mt071002 20080227
          Length = 406

 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 18/133 (13%)

Query: 288 GELKSPATS----------------GARVAENSGKIAAVTMRTQANGHPPLQNRN--KDT 329
           GE++SPA++                G +  EN  +  + T   +     P Q +N  K+ 
Sbjct: 269 GEIRSPASNQSLQERSSQDAVGSSGGPKTNENLTRTTSRTEVMENASKRPYQTQNIGKEI 328

Query: 330 VKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGED 389
             N +EDMP V TKG  PNG++IEG LY+Y KGEEV+I+CVCHG F++PAEFVKHAGG D
Sbjct: 329 GTNSVEDMPCVFTKGDGPNGRRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHAGGGD 388

Query: 390 VANPLKHIVVSPS 402
           VA+PL+HIVV+PS
Sbjct: 389 VAHPLRHIVVNPS 401



 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 25/38 (65%)

Query: 143 LIRTCSLPXXXXXXXXXXXXLQTLRRMEARRKRSEKQQ 180
           LIR+ SLP            LQTLRRMEA+R+RSEKQ+
Sbjct: 124 LIRSSSLPTETEEEWRKRKELQTLRRMEAKRRRSEKQR 161


>IMGA|CU179636_10.3 ABRC5  chr03_pseudomolecule_IMGAG_V2
           36254730-36255808 F EGN_Mt071002 20080227
          Length = 114

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/75 (62%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 327 KDTVKNMLEDMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAG 386
           K  V  +L  MP+V+T G  PNGK+IEGFLY+Y  GE V I+CVCHG F+TP EFV HAG
Sbjct: 38  KGDVMEILRQMPTVTTTGDGPNGKRIEGFLYKYRSGE-VCIVCVCHGSFLTPKEFVMHAG 96

Query: 387 GEDVANPLKHIVVSP 401
           G++VANP+KHI V P
Sbjct: 97  GKEVANPMKHITVYP 111


>IMGA|AC144473_21.5 hypothetical protein
           chr06_pseudomolecule_IMGAG_V2 18722433-18718823 E
           EGN_Mt071002 20080227
          Length = 487

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 336 DMPSVSTKGVSPNGKKIEGFLYRYSKGEEVKILCVCHGLFMTPAEFVKHAGGE 388
           ++P VST   S NG+ I G  YRY+   +++I+C CHG  MTP +FV+HA  E
Sbjct: 414 NLPWVST--TSSNGRTISGVTYRYNT-NQIRIVCACHGSHMTPEDFVRHANDE 463