Miyakogusa Predicted Gene

chr1.CM0284.500.nc
Show Alignment:  

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0284.500.nc - phase: 0 
         (609 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC123899_51.4 Contains similarity to thiol protease from Ph...   595   e-170

>IMGA|AC123899_51.4 Contains similarity to thiol protease from
           Phaedon cochleariae gb|Y17903. , related
           chr07_pseudomolecule_IMGAG_V2 16563266-16567637 H
           EGN_Mt071002 20080227
          Length = 716

 Score =  595 bits (1534), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 337/532 (63%), Positives = 386/532 (72%), Gaps = 22/532 (4%)

Query: 1   MDMTCSLPQSRMIQGGVG-----RHIS-AGRFDSRGRGFGCAFLGNWRSGSRLHFSRMNK 54
           +D+ CSLPQSR++ GG G     +++  AG FD R RGFGC  LG  +S  R  FS  NK
Sbjct: 3   IDIGCSLPQSRVLHGGAGTSYGQKYVGQAGCFDFRRRGFGCGLLG--KSVLRSRFSVENK 60

Query: 55  VSGVSACVSGGEG---LNVKRGLSCKNNSLFTGSRVIWSKCQGSDSLAYVDGNGRNVDHV 111
           VS +SA    G+    LN KR +S KN  L  GSR IW KCQGSDSLAYV+GNGRNVD+V
Sbjct: 61  VSCISALNDSGDEFKVLNKKRSVSSKNEKLLMGSRKIWLKCQGSDSLAYVNGNGRNVDYV 120

Query: 112 EGSGEGLGPGPVXXXXXXXXXXXXXXXXXXXXXXXIGVEELSVDELKELLQRALKELEVA 171
           EGSGE LG  PV                       IGVEE +VDELKELLQ+A+KELEVA
Sbjct: 121 EGSGEDLGVVPVAGVELDVSGEEGGKVERE-----IGVEEKNVDELKELLQKAVKELEVA 175

Query: 172 QINSTMFEEKVKKISETAIFLHDEAARSWSEVNSTLDTIQEIANEEHTAKEAVQNATMAL 231
           QINSTMFEEKVKKISETAIFLHDEAARS  +VNSTLD+IQ++ANEEH AK+AVQNATMAL
Sbjct: 176 QINSTMFEEKVKKISETAIFLHDEAARSLDDVNSTLDSIQKVANEEHIAKDAVQNATMAL 235

Query: 232 SVAEARLQVALDSLEVAKEVPDSEKGSDEGTGDKDMAEKGKSLFNAQEDIKQCQTHLANC 291
           S+AEA+LQVA++SLE  KEV +S   S+E  GDKD+ EK  +LF AQEDIK+CQ +L NC
Sbjct: 236 SLAEAKLQVAIESLEAVKEVHES---SNESDGDKDLTEKESTLFVAQEDIKKCQDNLTNC 292

Query: 292 EAELRRLQSRKEELQTEVSKLQEIAEKAQLNAVKAEEDVTNIMLLAEQAVAFELEATQRV 351
           E ELRRLQ++KEELQ EVSKLQEI+EKAQL+AVKAEEDVTNIMLLAEQAVAFELEATQRV
Sbjct: 293 EVELRRLQNKKEELQKEVSKLQEISEKAQLDAVKAEEDVTNIMLLAEQAVAFELEATQRV 352

Query: 352 NDAEIALQRADKSVSNLNADTTESIQVQDVESVSEDEKVDQGFSSDATVERNGDLATDDE 411
           NDAEIALQRADKS  NLNA+  E+IQV+DV  VSE+  V + FS D TV  + DLAT D+
Sbjct: 353 NDAEIALQRADKSFQNLNAEAVETIQVEDVVLVSEENMV-ESFSDDVTVGSDKDLATSDD 411

Query: 412 SLLP-KLSPETLSEKTSH-LEDITQSDNLSDNENGVQTKKQETQKDLTRDSSPFAPKALL 469
           + LP KL PET SEKT   LE+ TQ D +SDNENGVQTKKQETQKD T+DSSP APKALL
Sbjct: 412 ASLPAKLPPETQSEKTGQILEEPTQLDYISDNENGVQTKKQETQKDFTKDSSPLAPKALL 471

Query: 470 KKXXXXXXXXXXXXTEDGAEFTPTSVFEALVLLAXXXXXXXXXXXXXMGAGC 521
           KK             E+ AE TPTSVF+ L+L A             MGAG 
Sbjct: 472 KKSSRFFPASFFSFPEEEAESTPTSVFQGLILSAKKQFPKLVLGLLLMGAGA 523