Miyakogusa Predicted Gene
- chr1.CM0098.420.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0098.420.nd - phase: 0 /partial
(193 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition mot... 188 1e-48
IMGA|AC131026_44.4 RNA-binding region RNP-1 (RNA recognition mot... 65 1e-11
IMGA|CU459035_17.3 RNA-binding region RNP-1 (RNA recognition mot... 63 7e-11
IMGA|CT009540_36.5 RNA-binding region RNP-1 (RNA recognition mot... 62 1e-10
IMGA|AC145289_29.5 RNA-binding region RNP-1 (RNA recognition mot... 61 2e-10
IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition mot... 61 3e-10
IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition mot... 59 1e-09
IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition mot... 58 2e-09
IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition mot... 54 5e-08
IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition mot... 54 6e-08
IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition mot... 52 2e-07
IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition mot... 52 2e-07
IMGA|AC174312_11.5 RNA-binding region RNP-1 (RNA recognition mot... 52 2e-07
IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition mot... 50 7e-07
IMGA|CT868696_6.4 RNA-binding region RNP-1 (RNA recognition moti... 50 8e-07
IMGA|CT033766_5.5 U2 auxiliary factor small subunit chr05_pseudo... 49 2e-06
IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition moti... 48 3e-06
IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition mot... 47 6e-06
IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition mot... 47 6e-06
IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition mot... 47 7e-06
IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition moti... 46 9e-06
IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding p... 46 1e-05
IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition mot... 46 1e-05
IMGA|AC148484_33.5 RNA-binding region RNP-1 (RNA recognition mot... 44 4e-05
IMGA|AC121232_18.4 RNA-binding region RNP-1 (RNA recognition mot... 44 4e-05
IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition mot... 43 8e-05
IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition mot... 42 1e-04
IMGA|AC137701_37.4 RNA-binding region RNP-1 (RNA recognition mot... 42 1e-04
IMGA|AC146330_10.5 RNA-binding region RNP-1 (RNA recognition mot... 42 2e-04
IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition mot... 41 3e-04
IMGA|AC203559_11.4 RNA-binding region RNP-1 (RNA recognition mot... 41 3e-04
IMGA|AC202369_17.3 RNA-binding region RNP-1 (RNA recognition mot... 41 3e-04
IMGA|AC139707_45.4 RNA-binding region RNP-1 (RNA recognition mot... 41 4e-04
IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition mot... 40 6e-04
>IMGA|AC149134_50.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 23568765-23563374 E
EGN_Mt071002 20080227
Length = 486
Score = 188 bits (477), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 87/106 (82%), Positives = 93/106 (87%)
Query: 82 DDEPIQKLLEPMGKEQIISLLADAASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTAT 141
DDEPIQKLLEP KEQI SLL +AAS HRDVADRIRK+AD D SHRKIFVHGLGWDTT+
Sbjct: 82 DDEPIQKLLEPFSKEQISSLLCEAASKHRDVADRIRKIADGDASHRKIFVHGLGWDTTSA 141
Query: 142 TLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
TL+ AF QYG IEDCKAVTDKV+GKSKGYGFILFK R GARNALK+
Sbjct: 142 TLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKE 187
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
+ + RKI++ +G + A L F ++G IE+ DKVTGK KG+ ++KS AR
Sbjct: 226 EYTQRKIYISNVGPELDAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESAR 285
Query: 183 NALKD 187
AL++
Sbjct: 286 RALEE 290
>IMGA|AC131026_44.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 32295786-32291333 E
EGN_Mt071002 20080227
Length = 281
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D ++ K+FV GL W+T + T+ F+Q+G I + +TDK TG+SKGYGF+ F+ AR
Sbjct: 25 DTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAAR 84
Query: 183 NALKDEFVIM 192
A D ++
Sbjct: 85 RACADPSPVI 94
>IMGA|CU459035_17.3 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 21553444-21558849 F
EGN_Mt071002 20080227
Length = 283
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 39/65 (60%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D + K+FV GL W+T + F+Q+G I + +TDK TGKSKGYGF+ F+ AR
Sbjct: 12 DTTFTKVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESAR 71
Query: 183 NALKD 187
A D
Sbjct: 72 RACAD 76
>IMGA|CT009540_36.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 33868874-33866998 H
EGN_Mt071002 20080227
Length = 251
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 37/59 (62%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGA 181
D ++ KIFV GL W+T TL F Q+G I + +TD+ TGKSKGYGF+ FK A
Sbjct: 22 DTTYTKIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSA 80
>IMGA|AC145289_29.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 13200806-13192265 E
EGN_Mt071002 20080227
Length = 272
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D ++ K+FV GL W+T T+ F+Q+G I + +TDK TG+SKGYGF+ F+ A
Sbjct: 12 DTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPDAAM 71
Query: 183 NALKDEFVIM 192
A D I+
Sbjct: 72 RACVDAAPII 81
>IMGA|AC134242_17.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19467865-19466799 F
EGN_Mt071002 20080227
Length = 164
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 119 VADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSR 178
+A DV +R FV GL W T + L AF QYG I D K + D+ TG+S+G+GF+ F
Sbjct: 1 MASADVEYR-CFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADE 59
Query: 179 RGARNALK 186
+ R+A++
Sbjct: 60 KSMRDAIE 67
>IMGA|AC134242_14.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19485092-19483974 E
EGN_Mt071002 20080227
Length = 190
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
DV +R FV GL W T + L AF ++G I D K + D+ TG+S+G+GF+ F + R
Sbjct: 5 DVEYR-CFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMR 63
Query: 183 NALKD 187
+A+++
Sbjct: 64 DAIEE 68
>IMGA|AC134242_43.5 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 19512181-19511124 F
EGN_Mt071002 20080227
Length = 161
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
DV +R FV GL W T L AF QYG I D K + D+ TG+S+G+GF+ F + +
Sbjct: 3 DVEYR-CFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 61
Query: 183 NALK 186
+A++
Sbjct: 62 DAIE 65
>IMGA|AC202518_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 16448553-16449568 E
EGN_Mt071002 20080227
Length = 112
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ GL ++T T L F+Q+G I + K + + TG+SKGYGF+ F S A A K+
Sbjct: 34 KLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAATARKE 93
>IMGA|AC140027_27.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 23874434-23871286 F
EGN_Mt071002 20080227
Length = 284
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 108 NHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKS 167
N ++ + + V +K+FV GL + T+ TL AF+ +G + + K + DK++ +S
Sbjct: 173 NSLNMPNSSEASQEASVKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRS 232
Query: 168 KGYGFILFKSRRGARNALKD 187
KGY FI + + A ALK+
Sbjct: 233 KGYAFIEYTTEEAASAALKE 252
>IMGA|AC146705_26.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 23207650-23209533 F
EGN_Mt071002 20080227
Length = 146
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 124 VSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARN 183
+S K+F+ GL ++ +L AF YG + + + +TD+ TG+S+G+GF+ F S A +
Sbjct: 33 MSSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATS 92
Query: 184 ALK 186
AL
Sbjct: 93 ALS 95
>IMGA|AC144431_42.4 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 6167334-6172171 E
EGN_Mt071002 20080227
Length = 399
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 124 VSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARN 183
+ RK+ V G+ WD L +YG +EDC + ++ TG+S+G+G++ F S A+
Sbjct: 1 MEQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKE 60
Query: 184 ALKDEFVI 191
L E V+
Sbjct: 61 VLSGEHVL 68
>IMGA|AC174312_11.5 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 11950732-11953538 F
EGN_Mt071002 20080227
Length = 285
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 125 SHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNA 184
+ K+FV L W T+ +L AFQ++G + + + D TGKS+GYGF+ + ++ A
Sbjct: 202 TEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTA 261
Query: 185 L 185
L
Sbjct: 262 L 262
>IMGA|CU024864_17.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 25794794-25795821 H
EGN_Mt071002 20080227
Length = 135
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNA 184
K+FV GL W +L AF +G + + + V DK +G+++G+GF++F + A++A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSA 93
>IMGA|CT868696_6.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 30876631-30887902 E
EGN_Mt071002 20080227
Length = 436
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 122 EDVS-HRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRG 180
ED S H +FV L + T TL F Y D + + D TG+SKGYGF+ F+ +
Sbjct: 113 EDTSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQD 172
Query: 181 ARNALKD 187
A++A+ D
Sbjct: 173 AQSAIND 179
>IMGA|CT033766_5.5 U2 auxiliary factor small subunit
chr05_pseudomolecule_IMGAG_V2 23709374-23707315 E
EGN_Mt071002 20080227
Length = 161
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
+FV G+ +D T ++ F QYG + D V DK TGKSKG+ FI ++ +R
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQR 88
>IMGA|AC122162_7.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 2878943-2880084 F
EGN_Mt071002 20080227
Length = 134
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNA 184
KIFV GL + TT L AF QYG + V +K + KG+G++ F AR A
Sbjct: 33 KIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEEARKA 89
>IMGA|AC148526_13.4 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 6339165-6343189 E
EGN_Mt071002 20080227
Length = 522
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ G+ WDT L FQ +G + + + D+ TG+++G+GF++F A + +
Sbjct: 46 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 105
Query: 188 EFVI 191
+ VI
Sbjct: 106 KHVI 109
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%)
Query: 120 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRR 179
A + +KIFV GL T + F Q+G I D + D T + +G+GFI + S
Sbjct: 140 APTPIRTKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEE 199
Query: 180 GARNALKDEF 189
L F
Sbjct: 200 AVEKVLHKTF 209
>IMGA|CT030180_20.5 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 22195567-22197506 E
EGN_Mt071002 20080227
Length = 352
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 120 ADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
+ + S KIF+ GL DTT V F++YG I D + D+ TG+ +G+GFI +
Sbjct: 11 SGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITY 66
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 123 DVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGAR 182
D +KIFV G+ + L F ++G + + + + D T +S+G+GF++F S +
Sbjct: 102 DFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVD 161
Query: 183 NALKDEFVI 191
N L D +I
Sbjct: 162 NLLADGNMI 170
>IMGA|AC202362_16.3 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr01_pseudomolecule_IMGAG_V2 218619-221289 E
EGN_Mt071002 20080227
Length = 311
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 125 SHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKS 177
S KI+ LGWD T+ L AF + + K V ++ GKS+GYGF+ F++
Sbjct: 205 SPHKIYAGNLGWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFET 257
>IMGA|AC125368_8.5 RNA-binding region RNP-1 (RNA recognition motif)
chr07_pseudomolecule_IMGAG_V2 26182639-26180185 F
EGN_Mt071002 20080227
Length = 141
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 121 DEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF----- 175
+ ++ K+F+ GL TT L AF +G + + K +TD+ +G+SKG+ F+ +
Sbjct: 29 NSTLTSPKLFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEE 88
Query: 176 --KSRRGARNALKDEFVIMV 193
K+R G D +VI V
Sbjct: 89 AEKAREGMNAKFLDGWVIFV 108
>IMGA|AC148486_23.5 Ribosomal protein S2; Polyadenylate binding
protein, human types 1, 2, 3, 4
chr01_pseudomolecule_IMGAG_V2 6658115-6663331 F
EGN_Mt071002 20080227
Length = 647
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 108 NHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKS 167
+HRD + R A+ IF+ L L F +G I CK TD +G+S
Sbjct: 108 SHRDPSSRKSGTAN-------IFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQS 159
Query: 168 KGYGFILFKSRRGARNAL 185
KGYGF+ F++ A+NA+
Sbjct: 160 KGYGFVQFEAEDSAQNAI 177
>IMGA|CR955006_36.5 RNA-binding region RNP-1 (RNA recognition motif)
chr05_pseudomolecule_IMGAG_V2 36065353-36070155 E
EGN_Mt071002 20080227
Length = 479
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILF 175
K+F+ G+ WDT L F YG +++ + D+ TG+++G+GF++F
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF 54
>IMGA|AC148484_33.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 19709444-19714984 F
EGN_Mt071002 20080227
Length = 502
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 129 IFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
+FV L ++TT + + F+ YGAI+ + VTD + K +GY FI + R + A K
Sbjct: 137 LFVARLSYETTESRIKREFESYGAIKRVRLVTDAESNKPRGYAFIEYLHTRDMKAAYK 194
>IMGA|AC121232_18.4 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 12513934-12509664 E
EGN_Mt071002 20080227
Length = 506
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
K+F+ G+ WDT L F YG + + + D+ TG+++G+GF++F A + D
Sbjct: 32 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 91
Query: 188 EFVI 191
+ +I
Sbjct: 92 KHII 95
>IMGA|AC150443_40.5 RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF-hand
chr07_pseudomolecule_IMGAG_V2 32027929-32025407 E
EGN_Mt071002 20080227
Length = 284
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
++F+ GL DT+ + + G I + K + D+ TG+SKGY F+ +K++ A+ A+ D
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
>IMGA|AC174277_12.4 RNA-binding region RNP-1 (RNA recognition motif)
chr04_pseudomolecule_IMGAG_V2 39131449-39132842 F
EGN_Mt071002 20080227
Length = 292
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 106 ASNHRDVADRIRKVADEDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTG 165
A R +R+ DE+ + V L DT L+ F+ +GA+ D+ TG
Sbjct: 194 AGAERTTGSDMRRRNDEN----SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTG 249
Query: 166 KSKGYGFILFKSRRGARNAL 185
S+G+GF+ F SR A+ A+
Sbjct: 250 MSRGFGFVNFVSREDAQRAI 269
>IMGA|AC137701_37.4 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 16980780-16983467 E
EGN_Mt071002 20080227
Length = 590
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGA 181
ED HR +F+ L ++ L F +G +E V +VT + +G GF+ FK+ A
Sbjct: 121 EDDLHRTVFITNLPFELDTEELKQRFSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAA 180
Query: 182 RNAL 185
NA+
Sbjct: 181 DNAI 184
>IMGA|AC146330_10.5 RNA-binding region RNP-1 (RNA recognition motif)
chr02_pseudomolecule_IMGAG_V2 23524883-23519252 F
EGN_Mt071002 20080227
Length = 428
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 127 RKIFVHGLGWDTTATTLVYAFQ-QYGAIEDCKAVTDKVTGKSKGYGFILF 175
IFV L D T L F+ YG++ K VTD TG+SKGYGF+ F
Sbjct: 108 HSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKF 157
>IMGA|AC144483_30.5 RNA-binding region RNP-1 (RNA recognition motif)
chr08_pseudomolecule_IMGAG_V2 31240580-31235784 E
EGN_Mt071002 20080227
Length = 402
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 122 EDVS-HRKIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGF 172
ED S H IFV L + T TL F Y + D + + D+ TG+S+G+GF
Sbjct: 125 EDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGF 176
>IMGA|AC203559_11.4 RNA-binding region RNP-1 (RNA recognition motif)
chr06_pseudomolecule_IMGAG_V2 4176093-4171291 E
EGN_Mt071002 20080227
Length = 240
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
++F LG + L AF ++ + + V DK TGK+KGYGFI F + ALK+
Sbjct: 133 RLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKE 192
>IMGA|AC202369_17.3 RNA-binding region RNP-1 (RNA recognition motif)
chr01_pseudomolecule_IMGAG_V2 17195654-17190859 E
EGN_Mt071002 20080227
Length = 240
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALKD 187
++F LG + L AF ++ + + V DK TGK+KGYGFI F + ALK+
Sbjct: 133 RLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKE 192
>IMGA|AC139707_45.4 RNA-binding region RNP-1 (RNA recognition
motif); von Willebrand factor, type A
chr02_pseudomolecule_IMGAG_V2 27085036-27087059 H
EGN_Mt071002 20080227
Length = 98
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 128 KIFVHGLGWDTTATTLVYAFQQYGAIEDCKAVTDKVTGKSKGYGFILFKSRRGARNALK 186
K+FV L + TT L F +G + + +TD+ T + KG+GF+ +KS A A K
Sbjct: 8 KLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
>IMGA|CU457783_12.3 RNA-binding region RNP-1 (RNA recognition motif)
chr03_pseudomolecule_IMGAG_V2 29353518-29349911 E
EGN_Mt071002 20080227
Length = 420
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 122 EDVSHRKIFVHGLGWDTTATTLVYAFQ-QYGAIEDCKAVTDKVTGKSKGYGFILF 175
++V IFV L D T T L+ F +Y +++ K V D TG+SKGYGF+ F
Sbjct: 182 DNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRF 236