Miyakogusa Predicted Gene
- chr1.CM0098.370.nd
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= chr1.CM0098.370.nd - phase: 0
(316 letters)
Database: Medicago_aa2.0
38,834 sequences; 10,231,785 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|AC161401_8.4 Chloroplast protein import component Toc34 chr... 516 e-147
IMGA|AC147010_11.4 AIG1 chr02_pseudomolecule_IMGAG_V2 27670058-2... 123 8e-29
IMGA|AC152752_1.4 AIG1 chr04_pseudomolecule_IMGAG_V2 31280427-31... 120 6e-28
IMGA|AC157349_38.5 AIG1 chr08_pseudomolecule_IMGAG_V2 26924823-2... 96 1e-20
IMGA|AC203555_7.4 AIG1 chr04_pseudomolecule_IMGAG_V2 7794622-779... 45 3e-05
IMGA|AC203555_33.4 AIG1 chr04_pseudomolecule_IMGAG_V2 7672815-76... 44 7e-05
IMGA|AC156829_12.5 AIG1 - both ends partial chr04_pseudomolecule... 43 2e-04
IMGA|AC148341_31.5 GAF; AIG1 chr04_pseudomolecule_IMGAG_V2 78322... 42 3e-04
IMGA|AC203555_12.4 AIG1 chr04_pseudomolecule_IMGAG_V2 7773766-77... 42 4e-04
>IMGA|AC161401_8.4 Chloroplast protein import component Toc34
chr07_pseudomolecule_IMGAG_V2 23524447-23528115 E
EGN_Mt071002 20080227
Length = 332
Score = 516 bits (1328), Expect = e-147, Method: Compositional matrix adjust.
Identities = 256/311 (82%), Positives = 289/311 (92%), Gaps = 2/311 (0%)
Query: 1 MASQV--VREWSGINTFAPATQNKLFELLGQLKQENVNSLTILVMGKGGVGKSSTVNSII 58
MASQ VREWSGINTFAPATQ KL ELLG+LKQE+VNSLTILVMGKGGVGKSSTVNSII
Sbjct: 1 MASQQQQVREWSGINTFAPATQTKLLELLGKLKQEDVNSLTILVMGKGGVGKSSTVNSII 60
Query: 59 GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNLIKCFLLNKTI 118
GERVV+ISPFQSEGPRPVMVSR+RAGFTLNIIDTPGLIEGGYINDMAL++IK FLL+KTI
Sbjct: 61 GERVVAISPFQSEGPRPVMVSRARAGFTLNIIDTPGLIEGGYINDMALDIIKRFLLDKTI 120
Query: 119 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWNRAIVALTHAQFSPPDGLPYEEFFSK 178
DVLLYVDRLDAYRVDNLDKLVAKAITDSFGK IWN+AIVALTHAQFSPPD L Y+EFFSK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDALAYDEFFSK 180
Query: 179 RSEALLKVVRSGARIKKDASQASAIPVVLIENSGRCNKNDSDEKVLPNGIAWISNLVQKI 238
RSE+LL++++SGA +KKD +QASAIPVVLIENSGRCNKN++DEKVLPNGIAWI +LV I
Sbjct: 181 RSESLLQIIKSGASLKKDDAQASAIPVVLIENSGRCNKNETDEKVLPNGIAWIPHLVHTI 240
Query: 239 TEVALNKSESIHVDKNLIEGPNPNQTGKLWIPLLYALQYFFVIKPIEGLIQQDISSESRP 298
TE+ALNKSESI VDKNLIEGPNPNQ GKLWIP+L+AL++ ++KPIEGLI+ D+++E +P
Sbjct: 241 TEIALNKSESIFVDKNLIEGPNPNQRGKLWIPVLFALEFLLIMKPIEGLIKNDVANEKKP 300
Query: 299 SWEMRDAGLRK 309
SWE RD G++K
Sbjct: 301 SWETRDVGVKK 311
>IMGA|AC147010_11.4 AIG1 chr02_pseudomolecule_IMGAG_V2
27670058-27676046 E EGN_Mt071002 20080227
Length = 1338
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 118/238 (49%), Gaps = 14/238 (5%)
Query: 7 REWSGINTFAPATQNKLFELLGQLKQENVN-SLTILVMGKGGVGKSSTVNSIIGERVVSI 65
R + F+ + + E L QE ++ S TI+V+GK GVGKSST+NSI E +
Sbjct: 673 RNGGRVGAFSFDRASAMAEQLESAGQEPLDFSCTIMVLGKSGVGKSSTINSIFDEVKFNT 732
Query: 66 SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI---EGGYINDMALNLIKCFLLNKTIDVLL 122
F + V G + +IDTPGL+ N+ L+ +K F+ D++L
Sbjct: 733 DAFHMGTKKVQDVVGMVQGIKVRVIDTPGLLPSWSDQPHNEKILHSVKRFIKKTPPDIVL 792
Query: 123 YVDRLDAYRVDNLDKLVAKAITDSFGKAIWNRAIVALTHAQFSPPDG-----LPYEEFFS 177
Y+DRLD D D + + ITD FG IW AIV LTHA +PPDG Y+ F +
Sbjct: 793 YLDRLDMQSRDFSDMPLLRTITDIFGPPIWFNAIVVLTHAASAPPDGPNGTPSSYDMFVT 852
Query: 178 KRSEALLKVVRSGARIKKDASQASAIPVVLIENSGRCNKNDSDEKVLPNGIAWISNLV 235
+RS + + +R A PV L+EN C N + ++VLPNG W L+
Sbjct: 853 QRSHVVQQAIRQAA-----GDMRLMNPVSLVENHSACRTNTAGQRVLPNGQVWKPQLL 905
>IMGA|AC152752_1.4 AIG1 chr04_pseudomolecule_IMGAG_V2
31280427-31285319 E EGN_Mt071002 20080227
Length = 1387
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 108/205 (52%), Gaps = 14/205 (6%)
Query: 37 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA---GFTLNIIDTP 93
S+ ILV+GK GVGKS+T+NSI GE S S + GP V+ G + + DTP
Sbjct: 742 SINILVLGKTGVGKSATINSIFGETKTSFSAY---GPATTAVTEIVGMVDGVKVRVFDTP 798
Query: 94 GLIEGGY---INDMALNLIKCFLLNKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKA 150
GL + N L+ +K N D++LYVDRLD D D + +++T + G +
Sbjct: 799 GLKSSAFEQSYNRKVLSNVKKLTKNSPPDIVLYVDRLDLQTRDMNDLPMLRSVTTALGPS 858
Query: 151 IWNRAIVALTHAQFSPPDG-----LPYEEFFSKRSEALLKVVRSGARIKKDASQASAIPV 205
IW IV LTHA +PPDG L Y+ F ++R+ + + + + + + PV
Sbjct: 859 IWRNVIVTLTHAASAPPDGPSGSPLSYDVFVAQRTHIVQQTIGQAVGDLRLMNPSLMNPV 918
Query: 206 VLIENSGRCNKNDSDEKVLPNGIAW 230
L+EN C KN +KVLPNG +W
Sbjct: 919 SLVENHPSCRKNRDGQKVLPNGQSW 943
>IMGA|AC157349_38.5 AIG1 chr08_pseudomolecule_IMGAG_V2
26924823-26920244 E EGN_Mt071002 20080227
Length = 793
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 22/212 (10%)
Query: 37 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 96
S ILV+GK GVGKS+T+NSI + + + FQ + + G + IDTPG +
Sbjct: 177 SCRILVLGKTGVGKSATINSIFDQEKATTNAFQPATDCIQEIVGTVNGLNITFIDTPGFL 236
Query: 97 EGGYINDMALNL-----IKCFLLNKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAI 151
N++ N +K F+ D++LY +RLD D + K IT+ FG AI
Sbjct: 237 PSS-TNNVKRNKRIMLSVKRFIRKSPPDIVLYFERLDLINSGYSDFPLLKLITEVFGAAI 295
Query: 152 WNRAIVALTHAQFSPPDG-----LPYEEFFSKRSEALLKVVRSG---ARIKKDASQASAI 203
W I+ +TH+ S P+G + Y+ + S+ + + + + +R++
Sbjct: 296 WFNTILVMTHSSSSIPEGPNGYTVNYDSYTSQCTNLIQQYIHQAILDSRLEN-------- 347
Query: 204 PVVLIENSGRCNKNDSDEKVLPNGIAWISNLV 235
P + +EN +C +N EK+LPNG W S L+
Sbjct: 348 PALFVENHPQCPRNILGEKILPNGQIWRSQLL 379
>IMGA|AC203555_7.4 AIG1 chr04_pseudomolecule_IMGAG_V2
7794622-7796645 H EGN_Mt071002 20080227
Length = 285
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 39 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-------GFTLNIID 91
T++++G+ G GKS+T NSI+G++V F+S + S G +N+ID
Sbjct: 30 TVVLVGRTGNGKSATGNSILGKKV-----FKSRASSSGVTSSCEMQTAELSDGHIINVID 84
Query: 92 TPGLIEGGYIND-MALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK 149
TPGL E ++ + ++KC K I +L V + + R ++ ++ FG
Sbjct: 85 TPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVLSVRS-RFSEEEENALCSLQTLFGS 143
Query: 150 AIWNRAIVALTHAQFSPPDGLPYEEFFSKRSEALLKVVRS 189
I++ IV T DG +++ LK + S
Sbjct: 144 KIFDYMIVVFTGGDVLENDGDTLDDYLRGECPKSLKQILS 183
>IMGA|AC203555_33.4 AIG1 chr04_pseudomolecule_IMGAG_V2
7672815-7670851 H EGN_Mt071002 20080227
Length = 340
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 39 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGL 95
T++++G+ G GKS+T NSI+G++V + S S G + S G T+N+ID+PGL
Sbjct: 23 TLVLVGRTGNGKSATGNSILGKKVFN-SRASSSGITTSCEMQTSEMNDGQTVNVIDSPGL 81
Query: 96 IEGGY-INDMALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWN 153
+ I + +IKC L K I ++ V + R ++ + + FG I +
Sbjct: 82 FDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRT-RFTEEEENALRNVQKLFGSKIVD 140
Query: 154 RAIVALT 160
IV T
Sbjct: 141 HMIVVFT 147
>IMGA|AC156829_12.5 AIG1 - both ends partial
chr04_pseudomolecule_IMGAG_V2 7651135-7652700 H
EGN_Mt071002 20080227
Length = 277
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 39 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGL 95
T++++G+ G GKS+T NSI+G++V + S S G + S G T+N+ID+PGL
Sbjct: 14 TLVLVGRTGNGKSATGNSILGKKVFN-SRASSSGITTSCEMQTSEMNDGQTVNVIDSPGL 72
Query: 96 IEGGY-INDMALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWN 153
+ I + +IKC L K I ++ V + R ++ + + FG I +
Sbjct: 73 FDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRT-RFTEEEENALRNVQKLFGSKIVD 131
Query: 154 RAIVALT 160
IV T
Sbjct: 132 HMIVVFT 138
>IMGA|AC148341_31.5 GAF; AIG1 chr04_pseudomolecule_IMGAG_V2
7832253-7834360 H EGN_Mt071002 20080227
Length = 365
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 39 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGL 95
T+++ G+ G GKS+T NSI+G++V S S G + + G +N+IDTPGL
Sbjct: 26 TLVLFGRTGNGKSATGNSILGKKVFK-SRTSSSGVTTSCEMKTTELNDGQIVNVIDTPGL 84
Query: 96 IEGGY-INDMALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWN 153
+ I + ++KC L K I L+ V + R ++ +++ FG I +
Sbjct: 85 FDFSVGIELLGKEIVKCIDLAKDGIHALIVVFSVRT-RFTEEEESALRSVQKLFGSKIVD 143
Query: 154 RAIVALT 160
I+ T
Sbjct: 144 YMIIVFT 150
>IMGA|AC203555_12.4 AIG1 chr04_pseudomolecule_IMGAG_V2
7773766-7781622 E EGN_Mt071002 20080227
Length = 347
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 39 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-------GFTLNIID 91
T++++G+ G GKS+T NSI+G++V F+S + S G +N+ID
Sbjct: 31 TVVLVGRTGNGKSATGNSILGKKV-----FKSRASSSGVTSSCEMQTAELSDGQIVNVID 85
Query: 92 TPGLIEGGYIND-MALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK 149
TPGL E ++ + ++KC K I +L V + + R ++ +++ FG
Sbjct: 86 TPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVLSVRS-RFSEEEENALRSLQTLFGS 144
Query: 150 AIWNRAIVALT 160
I + IV T
Sbjct: 145 KIVDYMIVVFT 155