Miyakogusa Predicted Gene

chr1.CM0098.370.nd
Show Alignment: 

BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= chr1.CM0098.370.nd - phase: 0 
         (316 letters)

Database: Medicago_aa2.0 
           38,834 sequences; 10,231,785 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC161401_8.4 Chloroplast protein import component Toc34 chr...   516   e-147
IMGA|AC147010_11.4 AIG1 chr02_pseudomolecule_IMGAG_V2 27670058-2...   123   8e-29
IMGA|AC152752_1.4 AIG1 chr04_pseudomolecule_IMGAG_V2 31280427-31...   120   6e-28
IMGA|AC157349_38.5 AIG1 chr08_pseudomolecule_IMGAG_V2 26924823-2...    96   1e-20
IMGA|AC203555_7.4 AIG1 chr04_pseudomolecule_IMGAG_V2 7794622-779...    45   3e-05
IMGA|AC203555_33.4 AIG1 chr04_pseudomolecule_IMGAG_V2 7672815-76...    44   7e-05
IMGA|AC156829_12.5 AIG1 - both ends partial chr04_pseudomolecule...    43   2e-04
IMGA|AC148341_31.5 GAF; AIG1 chr04_pseudomolecule_IMGAG_V2 78322...    42   3e-04
IMGA|AC203555_12.4 AIG1 chr04_pseudomolecule_IMGAG_V2 7773766-77...    42   4e-04

>IMGA|AC161401_8.4 Chloroplast protein import component Toc34
           chr07_pseudomolecule_IMGAG_V2 23524447-23528115 E
           EGN_Mt071002 20080227
          Length = 332

 Score =  516 bits (1328), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 256/311 (82%), Positives = 289/311 (92%), Gaps = 2/311 (0%)

Query: 1   MASQV--VREWSGINTFAPATQNKLFELLGQLKQENVNSLTILVMGKGGVGKSSTVNSII 58
           MASQ   VREWSGINTFAPATQ KL ELLG+LKQE+VNSLTILVMGKGGVGKSSTVNSII
Sbjct: 1   MASQQQQVREWSGINTFAPATQTKLLELLGKLKQEDVNSLTILVMGKGGVGKSSTVNSII 60

Query: 59  GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNLIKCFLLNKTI 118
           GERVV+ISPFQSEGPRPVMVSR+RAGFTLNIIDTPGLIEGGYINDMAL++IK FLL+KTI
Sbjct: 61  GERVVAISPFQSEGPRPVMVSRARAGFTLNIIDTPGLIEGGYINDMALDIIKRFLLDKTI 120

Query: 119 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWNRAIVALTHAQFSPPDGLPYEEFFSK 178
           DVLLYVDRLDAYRVDNLDKLVAKAITDSFGK IWN+AIVALTHAQFSPPD L Y+EFFSK
Sbjct: 121 DVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDALAYDEFFSK 180

Query: 179 RSEALLKVVRSGARIKKDASQASAIPVVLIENSGRCNKNDSDEKVLPNGIAWISNLVQKI 238
           RSE+LL++++SGA +KKD +QASAIPVVLIENSGRCNKN++DEKVLPNGIAWI +LV  I
Sbjct: 181 RSESLLQIIKSGASLKKDDAQASAIPVVLIENSGRCNKNETDEKVLPNGIAWIPHLVHTI 240

Query: 239 TEVALNKSESIHVDKNLIEGPNPNQTGKLWIPLLYALQYFFVIKPIEGLIQQDISSESRP 298
           TE+ALNKSESI VDKNLIEGPNPNQ GKLWIP+L+AL++  ++KPIEGLI+ D+++E +P
Sbjct: 241 TEIALNKSESIFVDKNLIEGPNPNQRGKLWIPVLFALEFLLIMKPIEGLIKNDVANEKKP 300

Query: 299 SWEMRDAGLRK 309
           SWE RD G++K
Sbjct: 301 SWETRDVGVKK 311


>IMGA|AC147010_11.4 AIG1 chr02_pseudomolecule_IMGAG_V2
           27670058-27676046 E EGN_Mt071002 20080227
          Length = 1338

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 83/238 (34%), Positives = 118/238 (49%), Gaps = 14/238 (5%)

Query: 7   REWSGINTFAPATQNKLFELLGQLKQENVN-SLTILVMGKGGVGKSSTVNSIIGERVVSI 65
           R    +  F+    + + E L    QE ++ S TI+V+GK GVGKSST+NSI  E   + 
Sbjct: 673 RNGGRVGAFSFDRASAMAEQLESAGQEPLDFSCTIMVLGKSGVGKSSTINSIFDEVKFNT 732

Query: 66  SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI---EGGYINDMALNLIKCFLLNKTIDVLL 122
             F     +   V     G  + +IDTPGL+        N+  L+ +K F+     D++L
Sbjct: 733 DAFHMGTKKVQDVVGMVQGIKVRVIDTPGLLPSWSDQPHNEKILHSVKRFIKKTPPDIVL 792

Query: 123 YVDRLDAYRVDNLDKLVAKAITDSFGKAIWNRAIVALTHAQFSPPDG-----LPYEEFFS 177
           Y+DRLD    D  D  + + ITD FG  IW  AIV LTHA  +PPDG       Y+ F +
Sbjct: 793 YLDRLDMQSRDFSDMPLLRTITDIFGPPIWFNAIVVLTHAASAPPDGPNGTPSSYDMFVT 852

Query: 178 KRSEALLKVVRSGARIKKDASQASAIPVVLIENSGRCNKNDSDEKVLPNGIAWISNLV 235
           +RS  + + +R  A            PV L+EN   C  N + ++VLPNG  W   L+
Sbjct: 853 QRSHVVQQAIRQAA-----GDMRLMNPVSLVENHSACRTNTAGQRVLPNGQVWKPQLL 905


>IMGA|AC152752_1.4 AIG1 chr04_pseudomolecule_IMGAG_V2
           31280427-31285319 E EGN_Mt071002 20080227
          Length = 1387

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 108/205 (52%), Gaps = 14/205 (6%)

Query: 37  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA---GFTLNIIDTP 93
           S+ ILV+GK GVGKS+T+NSI GE   S S +   GP    V+       G  + + DTP
Sbjct: 742 SINILVLGKTGVGKSATINSIFGETKTSFSAY---GPATTAVTEIVGMVDGVKVRVFDTP 798

Query: 94  GLIEGGY---INDMALNLIKCFLLNKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKA 150
           GL    +    N   L+ +K    N   D++LYVDRLD    D  D  + +++T + G +
Sbjct: 799 GLKSSAFEQSYNRKVLSNVKKLTKNSPPDIVLYVDRLDLQTRDMNDLPMLRSVTTALGPS 858

Query: 151 IWNRAIVALTHAQFSPPDG-----LPYEEFFSKRSEALLKVVRSGARIKKDASQASAIPV 205
           IW   IV LTHA  +PPDG     L Y+ F ++R+  + + +       +  + +   PV
Sbjct: 859 IWRNVIVTLTHAASAPPDGPSGSPLSYDVFVAQRTHIVQQTIGQAVGDLRLMNPSLMNPV 918

Query: 206 VLIENSGRCNKNDSDEKVLPNGIAW 230
            L+EN   C KN   +KVLPNG +W
Sbjct: 919 SLVENHPSCRKNRDGQKVLPNGQSW 943


>IMGA|AC157349_38.5 AIG1 chr08_pseudomolecule_IMGAG_V2
           26924823-26920244 E EGN_Mt071002 20080227
          Length = 793

 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 22/212 (10%)

Query: 37  SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 96
           S  ILV+GK GVGKS+T+NSI  +   + + FQ        +  +  G  +  IDTPG +
Sbjct: 177 SCRILVLGKTGVGKSATINSIFDQEKATTNAFQPATDCIQEIVGTVNGLNITFIDTPGFL 236

Query: 97  EGGYINDMALNL-----IKCFLLNKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAI 151
                N++  N      +K F+     D++LY +RLD       D  + K IT+ FG AI
Sbjct: 237 PSS-TNNVKRNKRIMLSVKRFIRKSPPDIVLYFERLDLINSGYSDFPLLKLITEVFGAAI 295

Query: 152 WNRAIVALTHAQFSPPDG-----LPYEEFFSKRSEALLKVVRSG---ARIKKDASQASAI 203
           W   I+ +TH+  S P+G     + Y+ + S+ +  + + +      +R++         
Sbjct: 296 WFNTILVMTHSSSSIPEGPNGYTVNYDSYTSQCTNLIQQYIHQAILDSRLEN-------- 347

Query: 204 PVVLIENSGRCNKNDSDEKVLPNGIAWISNLV 235
           P + +EN  +C +N   EK+LPNG  W S L+
Sbjct: 348 PALFVENHPQCPRNILGEKILPNGQIWRSQLL 379


>IMGA|AC203555_7.4 AIG1 chr04_pseudomolecule_IMGAG_V2
           7794622-7796645 H EGN_Mt071002 20080227
          Length = 285

 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 15/160 (9%)

Query: 39  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-------GFTLNIID 91
           T++++G+ G GKS+T NSI+G++V     F+S      + S           G  +N+ID
Sbjct: 30  TVVLVGRTGNGKSATGNSILGKKV-----FKSRASSSGVTSSCEMQTAELSDGHIINVID 84

Query: 92  TPGLIEGGYIND-MALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK 149
           TPGL E    ++ +   ++KC    K  I  +L V  + + R    ++    ++   FG 
Sbjct: 85  TPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVLSVRS-RFSEEEENALCSLQTLFGS 143

Query: 150 AIWNRAIVALTHAQFSPPDGLPYEEFFSKRSEALLKVVRS 189
            I++  IV  T       DG   +++        LK + S
Sbjct: 144 KIFDYMIVVFTGGDVLENDGDTLDDYLRGECPKSLKQILS 183


>IMGA|AC203555_33.4 AIG1 chr04_pseudomolecule_IMGAG_V2
           7672815-7670851 H EGN_Mt071002 20080227
          Length = 340

 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 39  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGL 95
           T++++G+ G GKS+T NSI+G++V + S   S G      +  S    G T+N+ID+PGL
Sbjct: 23  TLVLVGRTGNGKSATGNSILGKKVFN-SRASSSGITTSCEMQTSEMNDGQTVNVIDSPGL 81

Query: 96  IEGGY-INDMALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWN 153
            +    I  +   +IKC  L K  I  ++ V  +   R    ++   + +   FG  I +
Sbjct: 82  FDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRT-RFTEEEENALRNVQKLFGSKIVD 140

Query: 154 RAIVALT 160
             IV  T
Sbjct: 141 HMIVVFT 147


>IMGA|AC156829_12.5 AIG1 - both ends partial
           chr04_pseudomolecule_IMGAG_V2 7651135-7652700 H
           EGN_Mt071002 20080227
          Length = 277

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 7/127 (5%)

Query: 39  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGL 95
           T++++G+ G GKS+T NSI+G++V + S   S G      +  S    G T+N+ID+PGL
Sbjct: 14  TLVLVGRTGNGKSATGNSILGKKVFN-SRASSSGITTSCEMQTSEMNDGQTVNVIDSPGL 72

Query: 96  IEGGY-INDMALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWN 153
            +    I  +   +IKC  L K  I  ++ V  +   R    ++   + +   FG  I +
Sbjct: 73  FDFSVGIELLGKEIIKCIDLAKDGIHAVIVVFSVRT-RFTEEEENALRNVQKLFGSKIVD 131

Query: 154 RAIVALT 160
             IV  T
Sbjct: 132 HMIVVFT 138


>IMGA|AC148341_31.5 GAF; AIG1 chr04_pseudomolecule_IMGAG_V2
           7832253-7834360 H EGN_Mt071002 20080227
          Length = 365

 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 39  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG---PRPVMVSRSRAGFTLNIIDTPGL 95
           T+++ G+ G GKS+T NSI+G++V   S   S G      +  +    G  +N+IDTPGL
Sbjct: 26  TLVLFGRTGNGKSATGNSILGKKVFK-SRTSSSGVTTSCEMKTTELNDGQIVNVIDTPGL 84

Query: 96  IEGGY-INDMALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKAIWN 153
            +    I  +   ++KC  L K  I  L+ V  +   R    ++   +++   FG  I +
Sbjct: 85  FDFSVGIELLGKEIVKCIDLAKDGIHALIVVFSVRT-RFTEEEESALRSVQKLFGSKIVD 143

Query: 154 RAIVALT 160
             I+  T
Sbjct: 144 YMIIVFT 150


>IMGA|AC203555_12.4 AIG1 chr04_pseudomolecule_IMGAG_V2
           7773766-7781622 E EGN_Mt071002 20080227
          Length = 347

 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 15/131 (11%)

Query: 39  TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-------GFTLNIID 91
           T++++G+ G GKS+T NSI+G++V     F+S      + S           G  +N+ID
Sbjct: 31  TVVLVGRTGNGKSATGNSILGKKV-----FKSRASSSGVTSSCEMQTAELSDGQIVNVID 85

Query: 92  TPGLIEGGYIND-MALNLIKCFLLNKT-IDVLLYVDRLDAYRVDNLDKLVAKAITDSFGK 149
           TPGL E    ++ +   ++KC    K  I  +L V  + + R    ++   +++   FG 
Sbjct: 86  TPGLFEVSAGSEFIGKEIVKCIDFAKDGIHAILVVLSVRS-RFSEEEENALRSLQTLFGS 144

Query: 150 AIWNRAIVALT 160
            I +  IV  T
Sbjct: 145 KIVDYMIVVFT 155