Miyakogusa Predicted Gene

chr6.LjT36O06.80.nd
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr6.LjT36O06.80.nd - phase: 0 
         (1980 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC003985A_C01 KMC003985A_c01                                          58   3e-08

>KMC003985A_C01 KMC003985A_c01
          Length = 801

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                        
Query: 1840 acagttggctcaatgcaagtcaaagttaatgggcttgctgcatcttctggtctcttgaag 1899
            ||||| |||||||||||||||| |||||||||  |   ||  ||||||||| | ||||||
Sbjct: 688  acagtaggctcaatgcaagtcagagttaatggattcagtgagtcttctggttttttgaag 629

                                 
Query: 1900 gttggcagtatcccacttgat 1920
            ||||| || ||||||||||||
Sbjct: 628  gttgggagcatcccacttgat 608



 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                        
Query: 1747 gatatttcctccatcttaaagattggttcagtcactattacccc 1790
            |||||||| ||  |||||||||||||||||||||| ||||||||
Sbjct: 796  gatatttcttctgtcttaaagattggttcagtcaccattacccc 753


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7673
Number of Sequences: 8469
Number of extensions: 7673
Number of successful extensions: 2148
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2144
Number of HSP's gapped (non-prelim): 4
length of query: 1980
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1963
effective length of database: 5,020,801
effective search space: 9855832363
effective search space used: 9855832363
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)