Miyakogusa Predicted Gene

chr6.CM0885.30.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr6.CM0885.30.nc - phase: 0 
         (1056 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC003929A_C01 KMC003929A_c01                                          72   1e-12

>KMC003929A_C01 KMC003929A_c01
          Length = 632

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 222/284 (78%)
 Strand = Plus / Plus

                                                                       
Query: 281 gattcagtgaagatgaggctcgctatttcttccagcagctcatctcaggagtttgctact 340
           |||| ||||||||||||||  | ||||||||||||||| | || || || ||| ||||||
Sbjct: 349 gatttagtgaagatgaggcaagatatttcttccagcagttaatatctggggttagctact 408

                                                                       
Query: 341 gtcatgcaatgcaaatctgccatcgagacttgaagctggagaacaccttgttggatggca 400
           ||||| ||||| |||| || ||| ||||  ||||  |||| |||||  | |||||||| |
Sbjct: 409 gtcattcaatggaaatttgtcatagagatctgaaattggaaaacactctcttggatggaa 468

                                                                       
Query: 401 gccctgcccctcggctcaaaatttgtgattttggttattccaagtcatctctgcttcact 460
             ||  ||||||| || ||||| || || || ||||| ||||||||  || | || ||||
Sbjct: 469 atccatcccctcgccttaaaatctgcgagttcggttactccaagtctgctatactgcact 528

                                                                       
Query: 461 ctaggcctaaatctactgtgggaactccagcatacattgcaccagaggttctttcacgta 520
           ||   ||||| || |  || |||||||| ||||||||||| || |||||||| ||||| |
Sbjct: 529 ctcaacctaagtcaagagttggaactcctgcatacattgctcccgaggttctgtcacgaa 588

                                                       
Query: 521 gagaatatgatggaaagttggcagatgtatggtcctgcggagtg 564
             || ||||| |||||| | |||||||| ||| |||| ||||||
Sbjct: 589 aggagtatgacggaaaggttgcagatgtttgggcctgtggagtg 632


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4540
Number of Sequences: 8469
Number of extensions: 4540
Number of successful extensions: 1306
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 4
length of query: 1056
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1040
effective length of database: 5,029,270
effective search space: 5230440800
effective search space used: 5230440800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)