Miyakogusa Predicted Gene
- chr6.CM0314.440.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr6.CM0314.440.nc - phase: 0
(1434 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC001581A_C02 KMC001581A_c02 906 0.0
KMC002380A_C01 KMC002380A_c01 543 e-154
>KMC001581A_C02 KMC001581A_c02
Length = 586
Score = 906 bits (457), Expect = 0.0
Identities = 463/465 (99%)
Strand = Plus / Minus
Query: 970 aagaacttgaaagagggttcacttgagttacctgaggggtttgaggacagaaccaaggaa 1029
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 586 aagaacttgaaagagggttcacttgagttacctgaggggtttgagcacagaaccaaggaa 527
Query: 1030 cgtggggttgtttggaaaacatgggcaccccagcttaagatcttggctcatggtgtcatt 1089
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cgtggggttgtttggaaaacatgggcaccccagcttaagatcttggctcatggtgtcatt 467
Query: 1090 ggagggtgcatgagtcactgtggttcaggttctgcaattgagaaggttcattttgggcat 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ggagggtgcatgagtcactgtggttcaggttctgcaattgagaaggttcattttgggcat 407
Query: 1150 gttcttgtgaccctgccttatttgctggatcagtgtctgttttcaagagcattagaagaa 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gttcttgtgaccctgccttatttgctggatcagtgtctgttttcaagagcattagaagaa 347
Query: 1210 aagaaagtggctattgaggtgccaaggaatgaacaagatggatcctttactagggactcc 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aagaaagtggctattgaggtgccaaggaatgaacaagatggatcctttactagggactcc 287
Query: 1270 gtggcgaagacattgaagttagcaatagtggatgaggaagggagtatctacaggaagaat 1329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gtggcgaagacattgaagttagcaatagtggatgaggaagggagtatctacaggaagaat 227
Query: 1330 gccaaagagatgggcaaggttttcagttctgaagatcttcataatcaatacattgaagat 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 gccaaagagatgggcaaggttttcagttctgaagatcttcataatcaatacattgaagat 167
Query: 1390 ttcattgctgctctccaaaagtacagggttcattccaatagttaa 1434
|||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 166 ttcattgctgctctcccaaagtacagggttcattccaatagttaa 122
>KMC002380A_C01 KMC002380A_c01
Length = 644
Score = 543 bits (274), Expect = e-154
Identities = 409/454 (90%)
Strand = Plus / Minus
Query: 977 tgaaagagggttcacttgagttacctgaggggtttgaggacagaaccaaggaacgtgggg 1036
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 644 tgaaagatggatcacttgagttacctgaggggtttgaggacagaaccaaggatcgtggga 585
Query: 1037 ttgtttggaaaacatgggcaccccagcttaagatcttggctcatggtgtcattggagggt 1096
||||||||||||||||||||||||||| |||||||| |||||||| |||||||| || |
Sbjct: 584 ttgtttggaaaacatgggcaccccagccgaagatcttagctcatggggtcattgggggat 525
Query: 1097 gcatgagtcactgtggttcaggttctgcaattgagaaggttcattttgggcatgttcttg 1156
|||||||||||| | | ||||||||| ||||||| |||| |||||||||| |||||||
Sbjct: 524 gcatgagtcactcggctgcaggttctgtcattgagatggttaattttgggcacgttcttg 465
Query: 1157 tgaccctgccttatttgctggatcagtgtctgttttcaagagcattagaagaaaagaaag 1216
|||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 464 tgaccctgccatattatctggaccagtgtctgttttcaagagcattagaagaaaagaaag 405
Query: 1217 tggctattgaggtgccaaggaatgaacaagatggatcctttactagggactccgtggcga 1276
||| || ||||| |||||||| || |||||||| |||||||||||||| || |||||||
Sbjct: 404 tgggaatagaggtaccaaggaacgagcaagatggttcctttactagggagtcggtggcga 345
Query: 1277 agacattgaagttagcaatagtggatgaggaagggagtatctacaggaagaatgccaaag 1336
||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 344 agacattgaggttagcaatagttgatgaggaagggagtgtctacaggaagaatgccaaag 285
Query: 1337 agatgggcaaggttttcagttctgaagatcttcataatcaatacattgaagatttcattg 1396
|||||||||| ||||||||||| ||| ||||||| |||||||||||||||||| |||||
Sbjct: 284 agatgggcaatgttttcagttccaaagttcttcatgatcaatacattgaagattgcattg 225
Query: 1397 ctgctctccaaaagtacagggttcattccaatag 1430
||||||| ||||| || ||| |||||||||||||
Sbjct: 224 ctgctcttcaaaaatataggcttcattccaatag 191
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6389
Number of Sequences: 8469
Number of extensions: 6389
Number of successful extensions: 1829
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 3
length of query: 1434
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1417
effective length of database: 5,020,801
effective search space: 7114475017
effective search space used: 7114475017
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)