Miyakogusa Predicted Gene

chr6.CM0139.460.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr6.CM0139.460.nc - phase: 0 
         (1026 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC003727A_C01 KMC003727A_c01                                         252   6e-67

>KMC003727A_C01 KMC003727A_c01
          Length = 521

 Score =  252 bits (127), Expect = 6e-67
 Identities = 130/131 (99%)
 Strand = Plus / Minus

                                                                        
Query: 892  agtcttacaaatccagcagttttgggatgcattgctgggtctgctatgatgaggaaagca 951
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387  agtcttacaaatccagcagttttgggatgcattgctgggtctgctatgatgaggaaagca 328

                                                                        
Query: 952  gctacccttgccttctccaataagaaacgatcaacggtcactggtgacatcatcgaatgc 1011
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 327  gctacccttgccttctcccataagaaacgatcaacggtcactggtgacatcatcgaatgc 268

                       
Query: 1012 ttggggaaaag 1022
            |||||||||||
Sbjct: 267  ttggggaaaag 257



 Score =  141 bits (71), Expect = 2e-33
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                       
Query: 824 cagtcaaatcagtaaccatctatggttctcctaggcgctgtggtggccagggtgatatcc 883
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cagtcaaatcagtaaccatctatggttctcctaggcgctgtggtggccagggtgatatcc 462

                      
Query: 884 tttctggaagt 894
           |||||||||||
Sbjct: 461 tttctggaagt 451


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3493
Number of Sequences: 8469
Number of extensions: 3493
Number of successful extensions: 923
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 2
length of query: 1026
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1010
effective length of database: 5,029,270
effective search space: 5079562700
effective search space used: 5079562700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)