Miyakogusa Predicted Gene
- chr6.CM0037.1300.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr6.CM0037.1300.nd + phase: 0
(4173 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC004243A_C01 KMC004243A_c01 959 0.0
KMC004909A_C01 KMC004909A_c01 698 0.0
>KMC004243A_C01 KMC004243A_c01
Length = 500
Score = 959 bits (484), Expect = 0.0
Identities = 484/484 (100%)
Strand = Plus / Plus
Query: 2874 caaagtcgcatcaaagaaagaaacttattctcataaggatcagtttggtgagaatacagg 2933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 caaagtcgcatcaaagaaagaaacttattctcataaggatcagtttggtgagaatacagg 76
Query: 2934 gaacactggggaacaaaatttagaagctcaattggatgatggcctctaccgaacattcaa 2993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 gaacactggggaacaaaatttagaagctcaattggatgatggcctctaccgaacattcaa 136
Query: 2994 tcagaattcaactttagaagaagctcgatgtgtcaaggtctcaccagaagagcagcaact 3053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcagaattcaactttagaagaagctcgatgtgtcaaggtctcaccagaagagcagcaact 196
Query: 3054 tcaagctgttgctgaaggtttagctgcttctgttctacactcgagcagttcttcaaatct 3113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tcaagctgttgctgaaggtttagctgcttctgttctacactcgagcagttcttcaaatct 256
Query: 3114 tgacttgcatgccagagatgcatcccatcatgaagacaacaatgatggagatgttcaaaa 3173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgacttgcatgccagagatgcatcccatcatgaagacaacaatgatggagatgttcaaaa 316
Query: 3174 taatctaatagatatgcagtgtaatgataaagctcaggatgtcagaagcaagatcccaga 3233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taatctaatagatatgcagtgtaatgataaagctcaggatgtcagaagcaagatcccaga 376
Query: 3234 aaaggcaaactttggcttccaagcatcagatgttggagcactgcaggttataaagaatgg 3293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaggcaaactttggcttccaagcatcagatgttggagcactgcaggttataaagaatgg 436
Query: 3294 tgaccttgaagaactgatagaattgggttctgggacctttgggactgtatatcatggaaa 3353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaccttgaagaactgatagaattgggttctgggacctttgggactgtatatcatggaaa 496
Query: 3354 atgg 3357
||||
Sbjct: 497 atgg 500
>KMC004909A_C01 KMC004909A_c01
Length = 907
Score = 698 bits (352), Expect = 0.0
Identities = 352/352 (100%)
Strand = Plus / Minus
Query: 3822 ggccccagaactgctgaatgggagcagtagccttgtttcagagaaggttgatgtattttc 3881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ggccccagaactgctgaatgggagcagtagccttgtttcagagaaggttgatgtattttc 848
Query: 3882 atttggcattgtcatgtgggaactcctgacaggagaagaaccttatgctgatttacacta 3941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 atttggcattgtcatgtgggaactcctgacaggagaagaaccttatgctgatttacacta 788
Query: 3942 tggagccataataggtggtatcgtgaacaacactttgcggcctccagttccagaatcttg 4001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tggagccataataggtggtatcgtgaacaacactttgcggcctccagttccagaatcttg 728
Query: 4002 tgacccagattggaaagtgctgatggagaagtgctggtcatcagagccatcagaaagacc 4061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tgacccagattggaaagtgctgatggagaagtgctggtcatcagagccatcagaaagacc 668
Query: 4062 aaccttcactgagattgccagtgaattacgttccatcggaagcaagatctctcccaaagg 4121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaccttcactgagattgccagtgaattacgttccatcggaagcaagatctctcccaaagg 608
Query: 4122 acagaatcaacagcagcaacctgcttcatctcagagtcaagtgcagaaataa 4173
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 acagaatcaacagcagcaacctgcttcatctcagagtcaagtgcagaaataa 556
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,801
Number of Sequences: 8469
Number of extensions: 13801
Number of successful extensions: 3800
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3798
Number of HSP's gapped (non-prelim): 2
length of query: 4173
length of database: 5,164,774
effective HSP length: 17
effective length of query: 4156
effective length of database: 5,020,801
effective search space: 20866448956
effective search space used: 20866448956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)