Miyakogusa Predicted Gene
- chr5.LjT43D06.200.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.LjT43D06.200.nd - phase: 0
(660 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003812A_C01 KMC003812A_c01 989 0.0
KMC002992A_C02 KMC002992A_c02 168 4e-42
>KMC003812A_C01 KMC003812A_c01
Length = 597
Score = 989 bits (499), Expect = 0.0
Identities = 556/581 (95%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 1 atggccaccctctactcaaatccttcaactctgaaagttgttttagcaagtttgcttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 atggccaccctctactcaaatccttcaactctgaaagttgttttagcaagtttgcttctc 76
Query: 61 ttgctaaccatt-aaggtgaactcagtagaaggagtttccttcaacttcaccaagttcac 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ttgctaaccattgaaggtgaactcagtagaaggagtttccttcaacttcaccaagttcac 136
Query: 120 tgatgatggtagtctaattctccaaggtgatgccaagatttggactgatgggaggttggc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgatgatggtagtctaattctccaaggtgatgccaagatttggactgatgggaggttggc 196
Query: 180 cctgccctctgatccattgattggcaagactacaagccgagtcttgtatgcaacaccggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cctgccctctgatccattgattggcaagactacaagccgagtcttgtatgcaacaccggt 256
Query: 240 gcccatttgggattcaaccacgggcagtgttgcaagctttgtttcttccttctcttttgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcccatttgggattcaaccacgggcagtgttgcaagctttgtttcttccttctcttttgt 316
Query: 300 tgtgagtgatgtccccggttataaaatatctgatggacttgnnnnnnnncttgcaccgtg 359
||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 317 tgtgagtgatgtccccggttataaaatatctgatggacttgttttttttcttgcaccgtg 376
Query: 360 ggggactacaatnnnnnnnaattcagaaggtaagaatcttggaatccttgatgnnnnnnn 419
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 377 ggggactacaatcccccccaattcagaaggtaagaatcttggaatccttgatgaagaaaa 436
Query: 420 tggttacaatcaatttgttgctgtagaatttgattcttacaacaatacaagggacccaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tggttacaatcaatttgttgctgtagaatttgattcttacaacaatacaagggacccaac 496
Query: 480 atttagacatatcggaattgatgtcaactctgtaatgtcaatgaatcttgtaaaatggaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 497 atttagacatatcggaattgatgtcaactctgtaatgtcaatgaatcttgtaaaaaggaa 556
Query: 540 cagggtttctggagcactggaaaaagcaatcataatatatg 580
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 557 cagggtttctggagcactggaaaaagcattcataatatatg 597
>KMC002992A_C02 KMC002992A_c02
Length = 1048
Score = 168 bits (85), Expect = 4e-42
Identities = 232/281 (82%)
Strand = Plus / Minus
Query: 1 atggccaccctctactcaaatccttcaactctgaaagttgttttagcaagtttgcttctc 60
|||||||| | |||||||||| |||| |||| || || |||||||| |||| || ||
Sbjct: 1020 atggccactccctactcaaatgcttccactcaaaattttcttttagcatgtttatttttc 961
Query: 61 ttgctaaccattaaggtgaactcagtagaaggagtttccttcaacttcaccaagttcact 120
|||||| |||| || ||||||| || || || | ||||||||||||||||| ||||||||
Sbjct: 960 ttgctagccatcaatgtgaacttagcagcagcaatttccttcaacttcaccgagttcact 901
Query: 121 gatgatggtagtctaattctccaaggtgatgccaagatttggactgatgggaggttggcc 180
|||||||| ||||||||| | ||||||||||||||||||||| | |||||||| |||||
Sbjct: 900 gatgatgggagtctaattattcaaggtgatgccaagatttgggcagatgggagcttggct 841
Query: 181 ctgccctctgatccattgattggcaagactacaagccgagtcttgtatgcaacaccggtg 240
|| ||| | || |||| |||| |||||||| || | ||||| |||||||| |||
Sbjct: 840 ctacccaccgacccatcagttggtttcactacaagtcgtgctttgtacgcaacaccagtg 781
Query: 241 cccatttgggattcaaccacgggcagtgttgcaagctttgt 281
|||||||||||||| ||||| |||| |||||||||||||||
Sbjct: 780 cccatttgggattctaccactggcaatgttgcaagctttgt 740
Score = 71.9 bits (36), Expect = 8e-13
Identities = 150/188 (79%)
Strand = Plus / Minus
Query: 426 caatcaatttgttgctgtagaatttgattcttacaacaatacaagggacccaacatttag 485
||||||| ||||||||||||| || ||| ||| || |||| | ||||| ||| |||
Sbjct: 595 caatcaaattgttgctgtagagttcgatactttcatcaatccgtgggactcaagccctag 536
Query: 486 acatatcggaattgatgtcaactctgtaatgtcaatgaatcttgtaaaatggaacagggt 545
|||||| |||||||||||||||||| |||| ||| |||| ||| |||||||| ||
Sbjct: 535 acatattggaattgatgtcaactctctaatttcattgaagactgtgccatggaacaaagt 476
Query: 546 ttctggagcactggaaaaagcaatcataatatatgactctccaactaagacattgagtgt 605
| || || ||||||||| || ||||| |||||||||| ||||||||||||||||||
Sbjct: 475 ggccggttcattggaaaaagtaacaataatttatgactctcaaactaagacattgagtgt 416
Query: 606 tgttgtga 613
| ||||||
Sbjct: 415 tcttgtga 408
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2536
Number of Sequences: 8469
Number of extensions: 2536
Number of successful extensions: 695
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 7
length of query: 660
length of database: 5,164,774
effective HSP length: 16
effective length of query: 644
effective length of database: 5,029,270
effective search space: 3238849880
effective search space used: 3238849880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)