Miyakogusa Predicted Gene
- chr5.LjT42D02.30.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.LjT42D02.30.nd - phase: 0
(5187 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC000785A_C01 KMC000785A_c01 1289 0.0
KMC020476A_C01 KMC020476A_c01 733 0.0
KMC000004A_C01 KMC000004A_c01 297 6e-80
>KMC000785A_C01 KMC000785A_c01
Length = 745
Score = 1289 bits (650), Expect = 0.0
Identities = 666/670 (99%), Gaps = 1/670 (0%)
Strand = Plus / Plus
Query: 1 atggctcaacgcgccgccgctacctccgattctcccctccgtgtcgccgccgcacctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 atggctcaacgcgccgccgctacctccgattctcccctccgtgtcgccgccgcacctcca 135
Query: 61 ttgcagatctccaaagatgtcacaggctctgacaatcctattccactttcaccacagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 ttgcagatctccaaagatgtcacaggctctgacaatcctattccactttcaccacagtgg 195
Query: 121 cttctgccaaagcccgtggagagtaaacctggatcaggaaatgtgggaaacaatgtgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 cttctgccaaagcccgtggagagtaaacctggatcaggaaatgtgggaaacaatgtgatc 255
Query: 181 tcaattccaccatatggcacccactcagagactgttaagacatctggtaatggagaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcaattccaccatatggcacccactcagagactgttaagacatctggtaatggagaggat 315
Query: 241 gggcatgatgtccaaaagagaaaggatgtgtttaggccatccatgctggactcagaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gggcatgatgtccaaaagagaaaggatgtgtttaggccatccatgctggactcagaaagt 375
Query: 301 ggacgtcgtgatcgttggcgtgatgaggagagagaaactaagtctgccacacgtaaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggacgtcgtgatcgttggcgtgatgaggagagagaaactaagtctgccacacgtaaagat 435
Query: 361 cgttggagggacggggacaaagacctaggtgattctcggaaagtggatcgatgggcagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cgttggagggacggggacaaagacctaggtgattctcggaaagtggatcgatgggcagat 495
Query: 421 agtcttccttcaaagaacttaggagaagcacgtcgtggtgcatctgatagtcatagacgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agtcttccttcaaagaacttaggagaagcacgtcgtggtgcatctgatagtcatagacgg 555
Query: 481 aatgattcaggaaaccgagaaactaactttgatcagcgacgtgagagtaagtggaacaca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aatgattcaggaaaccgagaaactaactttgatcagcgacgtgagagtaagtggaacaca 615
Query: 541 cgttggggtcctgacaataaggagccagaaggtcctcgtgaaaaatggagcgattctgca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cgttggggtcctgacaataaggagccagaaggtcctcgtgaaaaatggagcgattctgca 675
Query: 601 aaagatggtgatatacatctggacaaaggc-ttgtctcacatttccaatcttggaaagga 659
|||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||
Sbjct: 676 aaagatggtgatatacatctggacaaaggcattgtctcacattccaagtcttggaaagga 735
Query: 660 tgagaaggag 669
||||||||||
Sbjct: 736 tgagaaggag 745
>KMC020476A_C01 KMC020476A_c01
Length = 456
Score = 733 bits (370), Expect = 0.0
Identities = 370/370 (100%)
Strand = Plus / Plus
Query: 1 atggctcaacgcgccgccgctacctccgattctcccctccgtgtcgccgccgcacctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 atggctcaacgcgccgccgctacctccgattctcccctccgtgtcgccgccgcacctcca 146
Query: 61 ttgcagatctccaaagatgtcacaggctctgacaatcctattccactttcaccacagtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ttgcagatctccaaagatgtcacaggctctgacaatcctattccactttcaccacagtgg 206
Query: 121 cttctgccaaagcccgtggagagtaaacctggatcaggaaatgtgggaaacaatgtgatc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cttctgccaaagcccgtggagagtaaacctggatcaggaaatgtgggaaacaatgtgatc 266
Query: 181 tcaattccaccatatggcacccactcagagactgttaagacatctggtaatggagaggat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcaattccaccatatggcacccactcagagactgttaagacatctggtaatggagaggat 326
Query: 241 gggcatgatgtccaaaagagaaaggatgtgtttaggccatccatgctggactcagaaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gggcatgatgtccaaaagagaaaggatgtgtttaggccatccatgctggactcagaaagt 386
Query: 301 ggacgtcgtgatcgttggcgtgatgaggagagagaaactaagtctgccacacgtaaagat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggacgtcgtgatcgttggcgtgatgaggagagagaaactaagtctgccacacgtaaagat 446
Query: 361 cgttggaggg 370
||||||||||
Sbjct: 447 cgttggaggg 456
>KMC000004A_C01 KMC000004A_c01
Length = 1044
Score = 297 bits (150), Expect = 6e-80
Identities = 273/314 (86%)
Strand = Plus / Minus
Query: 4652 gacaaaaatcagcgagtggtaaaccaactgaacggcctctatcatcatcacctgcctctt 4711
|||||||||||| |||| |||||| ||| || | | |||||||| |||||||||||||||
Sbjct: 781 gacaaaaatcagggagtagtaaactaacagagcagtctctatcagcatcacctgcctctt 722
Query: 4712 cccaaccggtgctgaaattgaaaaaagatgccatgactaagctttctgaggccataggct 4771
| ||| | ||||||||| ||||||||||||||||||||| |||||| ||||| | ||
Sbjct: 721 ctcaatcattgctgaaatcaaaaaaagatgccatgactaagaattctgaagccatggact 662
Query: 4772 tcagagattggtgtgagaatgagtgtgtcaggcttattgggacaaaagatacaagtttcc 4831
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 661 tcagagtttggtgtgagaatgagtgtgtcaggcttattgggacgaaagatacaagtttcc 602
Query: 4832 ttgaattttgcttgaagcaatccagatcagaagctgagatgtttctcatagaaaaccttg 4891
|||| ||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct: 601 ttgagttttgcttgaagcaatccagatctgaagcggagatgtttctgatagaaaacctcg 542
Query: 4892 gatcattcgaccctgaccataaatttattgataaattcctcaattacaaggagctgttac 4951
|| ||| || ||||| ||| |||| ||||| ||||||||||| |||| |||| | |||
Sbjct: 541 gaacatatgatcctgatcatgaattcattgaaaaattcctcaactacatggagttactac 482
Query: 4952 cttcagatgttttg 4965
| |||||||||||
Sbjct: 481 caccagatgttttg 468
Score = 107 bits (54), Expect = 1e-22
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 4495 tcaaaatacaaaggggatgatgacttattttggggcccaattgagcagcctaagcaagaa 4554
|||||| |||||||||||||||||||||| ||||| ||| ||||||| | |||| ||||
Sbjct: 935 tcaaaacacaaaggggatgatgacttattctggggtccagttgagcaatccaagctagaa 876
Query: 4555 actaagcagtcagatttccctcagcttgcaagtcagggaagccggggttc 4604
| ||||||||||| ||||||||| |||||||| ||||| ||| |||||||
Sbjct: 875 aataagcagtcaggtttccctcaacttgcaagccaggggagctggggttc 826
Score = 101 bits (51), Expect = 7e-21
Identities = 63/67 (94%)
Strand = Plus / Minus
Query: 5117 ctgcagttttgggattcaatgttgtgagtaaccggatcatgatgggtgagatccaaaccg 5176
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |
Sbjct: 325 ctgcagttttgggattcaatgtcgtaagtaaccggatcatgatgggtgagatccagacag 266
Query: 5177 tagaaga 5183
|||||||
Sbjct: 265 tagaaga 259
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,294
Number of Sequences: 8469
Number of extensions: 18294
Number of successful extensions: 4927
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4919
Number of HSP's gapped (non-prelim): 7
length of query: 5187
length of database: 5,164,774
effective HSP length: 18
effective length of query: 5169
effective length of database: 5,012,332
effective search space: 25908744108
effective search space used: 25908744108
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)