Miyakogusa Predicted Gene
- chr5.LjT17N18.130.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.LjT17N18.130.nd + phase: 0 /pseudo
(2621 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC017160A_C01 KMC017160A_c01 357 4e-98
KMC000639A_C01 KMC000639A_c01 313 5e-85
KMC009357A_C01 KMC009357A_c01 48 4e-05
>KMC017160A_C01 KMC017160A_c01
Length = 498
Score = 357 bits (180), Expect = 4e-98
Identities = 201/204 (98%), Gaps = 3/204 (1%)
Strand = Plus / Plus
Query: 1 atggggtcgaaaccgtggctgcatcctgctcctccttaccgaccacttgaatcgcactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 atggggtcgaaaccgtggctgcatcctgctcctccttaccgaccacttgaatcgcactgg 355
Query: 61 gacaccgatgaagacgatcctggtcctcgctgtggtcacacgctcactgctgtagccgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gacaccgatgaagacgatcctggtcctcgctgtggtcacacgctcactgctgtagccgcc 415
Query: 121 accaagtc-gcgcggtccgcgcttaatcctcttcggcggcgccaccgccattgaaggagg 179
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 416 accaagtctgcgcggtccgcgcttaatcctcttcggcgg-gccaccgccattgaaggagg 474
Query: 180 atc-tacttcagctcccggcattc 202
||| ||||||||||||||||||||
Sbjct: 475 atcttacttcagctcccggcattc 498
>KMC000639A_C01 KMC000639A_c01
Length = 561
Score = 313 bits (158), Expect = 5e-85
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 2464 tgattcatcctataccacctccccttcagtcacctgaaacatctccagagcgtgtgatgg 2523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgattcatcctataccacctccccttcagtcacctgaaacatctccagagcgtgtgatgg 502
Query: 2524 atgagacatggatgcaggaacttaatattcaaaggccgccaactcctactaggggtcgac 2583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgagacatggatgcaggaacttaatattcaaaggccgccaactcctactaggggtcgac 442
Query: 2584 cacagcctgaccttgatcgtggctctctagcatatata 2621
||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagcctgaccttgatcgtggctctctagcatatata 404
>KMC009357A_C01 KMC009357A_c01
Length = 791
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1814 attacttgtttttgggagattatgttga 1841
||||||||||| ||||||||||||||||
Sbjct: 390 attacttgtttatgggagattatgttga 417
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7914
Number of Sequences: 8469
Number of extensions: 7914
Number of successful extensions: 2190
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2182
Number of HSP's gapped (non-prelim): 5
length of query: 2621
length of database: 5,164,774
effective HSP length: 17
effective length of query: 2604
effective length of database: 5,020,801
effective search space: 13074165804
effective search space used: 13074165804
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)