Miyakogusa Predicted Gene

chr5.LjT15N12.20.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr5.LjT15N12.20.nc + phase: 0 
         (1749 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC014845A_C01 KMC014845A_c01                                          46   1e-04
KMC003898A_C01 KMC003898A_c01                                          44   5e-04

>KMC014845A_C01 KMC014845A_c01
          Length = 859

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 862 gaagatgaagaagatgaagatgaagat 888
           |||||||||||||||||||| ||||||
Sbjct: 725 gaagatgaagaagatgaagaagaagat 699


>KMC003898A_C01 KMC003898A_c01
          Length = 1007

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 862 gaagatgaagaagatgaagatg 883
           ||||||||||||||||||||||
Sbjct: 431 gaagatgaagaagatgaagatg 410


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6506
Number of Sequences: 8469
Number of extensions: 6506
Number of successful extensions: 2249
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2232
Number of HSP's gapped (non-prelim): 14
length of query: 1749
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1732
effective length of database: 5,020,801
effective search space: 8696027332
effective search space used: 8696027332
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)