Miyakogusa Predicted Gene
- chr5.CM1439.180.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.CM1439.180.nd + phase: 0
(888 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC003217A_C01 KMC003217A_c01 335 4e-92
KMC008816A_C01 KMC008816A_c01 186 3e-47
>KMC003217A_C01 KMC003217A_c01
Length = 462
Score = 335 bits (169), Expect = 4e-92
Identities = 207/217 (95%), Gaps = 2/217 (0%)
Strand = Plus / Minus
Query: 674 ctttgccttcaatcaagtacaagac-tgggaatgatcaacatggaagcaatgattcgtgt 732
|||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct: 462 ctttgccttcaatcaagtaccagacctgggaatgatcaacatggaagccatgattcgtgt 403
Query: 733 gttatttgtcgggtggactatgaggatgacgagtccttgacagttctttcctgcaaacat 792
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 402 gttatttgtcgggtggactatgaggatgacgagtccttgaccgttctttcctgccaacat 343
Query: 793 ctgtaccatcctgagtgcattaacaattggttgaaaataaacaaggtttgccctgtttgc 852
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 342 ctgtaccatcctgagtgcattaaccattggttgaaaataaaacaggtttgccctgtttgc 283
Query: 853 a-gtactgaggtatctgcttctgggagcaacttatag 888
| |||||||||||||||||| ||||||||||||||||
Sbjct: 282 acgtactgaggtatctgcttttgggagcaacttatag 246
>KMC008816A_C01 KMC008816A_c01
Length = 465
Score = 186 bits (94), Expect = 3e-47
Identities = 178/206 (86%)
Strand = Plus / Minus
Query: 534 ggacatggaggagcatggtggtaattcacaggatgcttgggaggatgttgatccagacga 593
|||||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 454 ggacatagatgagcatggtaataattcacaggatgcttggggggatgttgatccagacga 395
Query: 594 actttcctacgaggaactactagcattgggtgaagtagttggaactgaaagcagaggtct 653
|||||| || ||||| |||||||||||| | ||||| || |||| |||||||||||| ||
Sbjct: 394 actttcatatgaggagctactagcattgtgggaagtggtaggaattgaaagcagaggact 335
Query: 654 tacaacagatactattgcctctttgccttcaatcaagtacaagactgggaatgatcaaca 713
| |||| |||||||| | | |||||||||| |||| ||| |||| ||||||||||||||
Sbjct: 334 tccaactaatactattacatatttgccttcagtcaactaccagaccgggaatgatcaaca 275
Query: 714 tggaagcaatgattcgtgtgttattt 739
|||||| ||||||| ||| ||||||
Sbjct: 274 cggaagccatgattcatgtattattt 249
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 858 tgaggtatctgcttctgggagcaacttatag 888
|||||||||||||||||||||| ||||||||
Sbjct: 226 tgaggtatctgcttctgggagccacttatag 196
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2424
Number of Sequences: 8469
Number of extensions: 2424
Number of successful extensions: 688
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 3
length of query: 888
length of database: 5,164,774
effective HSP length: 16
effective length of query: 872
effective length of database: 5,029,270
effective search space: 4385523440
effective search space used: 4385523440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)