Miyakogusa Predicted Gene

chr5.CM1439.180.nd
Show Alignment: 
BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr5.CM1439.180.nd + phase: 0 
         (888 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC003217A_C01 KMC003217A_c01                                         335   4e-92
KMC008816A_C01 KMC008816A_c01                                         186   3e-47

>KMC003217A_C01 KMC003217A_c01
          Length = 462

 Score =  335 bits (169), Expect = 4e-92
 Identities = 207/217 (95%), Gaps = 2/217 (0%)
 Strand = Plus / Minus

                                                                       
Query: 674 ctttgccttcaatcaagtacaagac-tgggaatgatcaacatggaagcaatgattcgtgt 732
           |||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||
Sbjct: 462 ctttgccttcaatcaagtaccagacctgggaatgatcaacatggaagccatgattcgtgt 403

                                                                       
Query: 733 gttatttgtcgggtggactatgaggatgacgagtccttgacagttctttcctgcaaacat 792
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 402 gttatttgtcgggtggactatgaggatgacgagtccttgaccgttctttcctgccaacat 343

                                                                       
Query: 793 ctgtaccatcctgagtgcattaacaattggttgaaaataaacaaggtttgccctgtttgc 852
           |||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||
Sbjct: 342 ctgtaccatcctgagtgcattaaccattggttgaaaataaaacaggtttgccctgtttgc 283

                                                
Query: 853 a-gtactgaggtatctgcttctgggagcaacttatag 888
           | |||||||||||||||||| ||||||||||||||||
Sbjct: 282 acgtactgaggtatctgcttttgggagcaacttatag 246


>KMC008816A_C01 KMC008816A_c01
          Length = 465

 Score =  186 bits (94), Expect = 3e-47
 Identities = 178/206 (86%)
 Strand = Plus / Minus

                                                                       
Query: 534 ggacatggaggagcatggtggtaattcacaggatgcttgggaggatgttgatccagacga 593
           |||||| || |||||||||  |||||||||||||||||||| ||||||||||||||||||
Sbjct: 454 ggacatagatgagcatggtaataattcacaggatgcttggggggatgttgatccagacga 395

                                                                       
Query: 594 actttcctacgaggaactactagcattgggtgaagtagttggaactgaaagcagaggtct 653
           |||||| || ||||| |||||||||||| | ||||| || |||| |||||||||||| ||
Sbjct: 394 actttcatatgaggagctactagcattgtgggaagtggtaggaattgaaagcagaggact 335

                                                                       
Query: 654 tacaacagatactattgcctctttgccttcaatcaagtacaagactgggaatgatcaaca 713
           | ||||  |||||||| | | |||||||||| |||| ||| |||| ||||||||||||||
Sbjct: 334 tccaactaatactattacatatttgccttcagtcaactaccagaccgggaatgatcaaca 275

                                     
Query: 714 tggaagcaatgattcgtgtgttattt 739
            |||||| ||||||| ||| ||||||
Sbjct: 274 cggaagccatgattcatgtattattt 249



 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 858 tgaggtatctgcttctgggagcaacttatag 888
           |||||||||||||||||||||| ||||||||
Sbjct: 226 tgaggtatctgcttctgggagccacttatag 196


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2424
Number of Sequences: 8469
Number of extensions: 2424
Number of successful extensions: 688
Number of sequences better than 1.0e-03: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 3
length of query: 888
length of database: 5,164,774
effective HSP length: 16
effective length of query: 872
effective length of database: 5,029,270
effective search space: 4385523440
effective search space used: 4385523440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)