Miyakogusa Predicted Gene

chr5.CM0911.360.nd

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr5.CM0911.360.nd - phase: 0 
         (4797 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC000032A_C01 KMC000032A_c01                                         416   e-116

>KMC000032A_C01 KMC000032A_c01
          Length = 542

 Score =  416 bits (210), Expect = e-116
 Identities = 236/242 (97%), Gaps = 2/242 (0%)
 Strand = Plus / Minus

                                                                        
Query: 4558 aagaaagaggttcgatttagatcttcatcttttagtgaaggcgctggatcagagacatca 4617
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542  aagaaagagattcgatttagatcttcatcttttagtgaaggcgctggatcagagacatca 483

                                                                        
Query: 4618 tttatagacatgctcaaaaaacctgttcttcctgaggtggatacacattcaaccagcgga 4677
            |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 482  tttatagacatgctcaagcaacctgttcttcctgaggtggatacacattcaaccagcgga 423

                                                                        
Query: 4678 gctgggactgagccatctgacggtggacaagccggccgaagtggcaaaaagaagggtaag 4737
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422  gctgggactgagccatctgacggtggacaagccggccgaagtggcaaaaagaagggtaag 363

                                                                        
Query: 4738 aaaggaaagcagatagatccttcacttcttgg-ttcaaggtctccag-caatcggatcat 4795
            |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct: 362  aaaggaaagcagatagatccttcacttcttggtttcaaggtctccagccactcggatcat 303

              
Query: 4796 ga 4797
            ||
Sbjct: 302  ga 301


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,416
Number of Sequences: 8469
Number of extensions: 17416
Number of successful extensions: 4793
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4791
Number of HSP's gapped (non-prelim): 1
length of query: 4797
length of database: 5,164,774
effective HSP length: 18
effective length of query: 4779
effective length of database: 5,012,332
effective search space: 23953934628
effective search space used: 23953934628
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 23 (46.1 bits)