Miyakogusa Predicted Gene
- chr5.CM0359.20.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.CM0359.20.nd - phase: 0
(1077 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC001927A_C01 KMC001927A_c01 260 3e-69
KMC000928A_C01 KMC000928A_c01 167 3e-41
KMC001470A_C04 KMC001470A_c04 149 7e-36
>KMC001927A_C01 KMC001927A_c01
Length = 788
Score = 260 bits (131), Expect = 3e-69
Identities = 501/623 (80%), Gaps = 1/623 (0%)
Strand = Plus / Plus
Query: 28 gatgaactcatagccaatgctgcttacattggctctcctggaaagggtatccttgctgct 87
||||| ||||| ||||| ||||| ||||||||| | |||||||||||||| || ||||||
Sbjct: 164 gatgagctcattgccaacgctgcctacattggcacccctggaaagggtattctcgctgct 223
Query: 88 gatgagtccacaggcacaattggcaagcgattcgacagcatcaaagtggagaatgttgaa 147
||||| || ||||| || ||||| ||||| | | ||||||||| || ||||||||||||
Sbjct: 224 gatgaatcaacaggaactattggaaagcgtctagccagcatcaatgttgagaatgttgaa 283
Query: 148 tcaaataggcgtgctcttcgcgagctcctattcacggcccctgggtgtgtagagtgcctc 207
| || |||||||||||||| |||||||| ||||| ||||||| | | ||| | ||
Sbjct: 284 accaacaggcgtgctcttcgtgagctccttttcaccacccctggagctctccagtacatc 343
Query: 208 agtggtgttatcatgtttgaggaaaccctgtaccaaaagactgcttcaggaaaactcttt 267
||||| || ||| | |||||||||||||||||||| | |||||| |||| || | ||||
Sbjct: 344 agtggagtgatcctctttgaggaaaccctgtaccagagtactgctgcaggcaagcccttt 403
Query: 268 gtggacgtgttgaaggaagctaatgttcttactggtattaaggttgacaagggcactgtt 327
|| || || |||||||||||| |||||| | ||||| |||||||||||||| ||||||
Sbjct: 404 gttgatgttttgaaggaagctggtgttctccccggtatcaaggttgacaagggtactgtt 463
Query: 328 gaacttgctgggacaaatggagaaaccaccacacagggtttagacgaccttggcaagcgc 387
|||||||| || || ||||||| |||||||| |||||| |||| | |||||| |||
Sbjct: 464 gaacttgccggaactgatggagagaccaccactcagggtctagatggccttggtgcgcgt 523
Query: 388 tgccagaagtactacgaagctggtgcacggtttgctaaatggcgtgccgttttgaaaatc 447
||| |||||||| ||||| |||||||| ||||| |||||||||||||| |||| |||
Sbjct: 524 tgcgctaagtactatgaagccggtgcacgctttgccaaatggcgtgccgtgctgaagatc 583
Query: 448 ggtccaaacgaaccatctccattgtcaatccatgaaaatgcatacggtttggctcgatac 507
|| || ||||| |||||| | || |||||||| || || || |||||||| ||||
Sbjct: 584 ggccccaacgagccatctgagctttctatccatgagaacgcctatggtttggccagatat 643
Query: 508 gctgccatatgccaagaaaacggcttggtccccattgtggagcctgagattctggtggat 567
|||| ||||||||| || || || |||| || ||||| ||||||||||| ||||| |||
Sbjct: 644 gctgtcatatgccaggagaatggtctggttccaattgttgagcctgagatcctggttgat 703
Query: 568 ggatctcatgacatcaacatatgtgctgatgtaaccgagcgcgttctcgcagcatgctac 627
||| |||||||||| ||| ||||||| | | || ||||| || || || |||||||||
Sbjct: 704 ggacctcatgacattcacaagtgtgctgctatcacagagcgtgtccttgctgcatgctac 763
Query: 628 aaggcgctaaatgaccaccatgt 650
|||| | ||||||||||||||
Sbjct: 764 -aggctttgaatgaccaccatgt 785
>KMC000928A_C01 KMC000928A_c01
Length = 611
Score = 167 bits (84), Expect = 3e-41
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 994 gcaactcttggaagttacaagggtgatgctaaccttgctgagggtgcctcagagtctctc 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gcaactcttggaagttacaagggtgatgctaaccttgctgagggtgcctcagagtctctc 552
Query: 1054 catgtcaaggattacaaatactga 1077
||||||||||||||||||||||||
Sbjct: 551 catgtcaaggattacaaatactga 528
>KMC001470A_C04 KMC001470A_c04
Length = 700
Score = 149 bits (75), Expect = 7e-36
Identities = 237/291 (81%)
Strand = Plus / Minus
Query: 787 gttttcttgtctggagggcagagcgaggaggaggcgaccgtgaacctcaacgcgatgaac 846
|||||||||||||| |||||||| |||||| | || |||| |||||||| || || |||
Sbjct: 575 gttttcttgtctggtgggcagagtgaggagcaagcttccgtcaacctcaatgccatcaac 516
Query: 847 aagctcaaggggaagaagccttggtctcttacattctcctttgggagggcacttcagcag 906
|| ||||||| |||||||| ||| |||| | ||||| ||||| |||||||||||||||
Sbjct: 515 caggtcaagggaaagaagccatggactctctccttctcttttggaagggcacttcagcag 456
Query: 907 agcactctcaaggcttgggctgggaaggaggaaaatgttgaaacggctcaggctacattc 966
||||| || ||||| ||| |||| ||||| || ||||| | | |||||| ||| | |||
Sbjct: 455 agcacccttaaggcatggtctggaaaggaagagaatgtgaagaaggctcaagctgccttc 396
Query: 967 ctcaccaggtgcaaggcgaactcagaagcaactcttggaagttacaagggtgatgctaac 1026
| || ||| |||||| |||||||| ||||||||||||| ||||||||| || || |
Sbjct: 395 ttgacaagggccaaggctaactcagaggcaactcttggaacttacaagggagactctcaa 336
Query: 1027 cttgctgagggtgcctcagagtctctccatgtcaaggattacaaatactga 1077
|||| |||||| ||||||||| |||||||||||||| ||||| ||||||
Sbjct: 335 cttggtgagggcgcctcagagagcctccatgtcaaggactacaagtactga 285
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 670 ttgaagcctaacatggtgacaccaggatcagattctccaaaggttgctccggaggtgatt 729
|||||||||||||||||||| || ||||| |||||||| |||||| | || |||||| |
Sbjct: 692 ttgaagcctaacatggtgacccccggatctgattctcctaaggttacccctgaggtggtc 633
Query: 730 gctgagcacac 740
|| ||||||||
Sbjct: 632 gccgagcacac 622
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3222
Number of Sequences: 8469
Number of extensions: 3222
Number of successful extensions: 843
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 5
length of query: 1077
length of database: 5,164,774
effective HSP length: 16
effective length of query: 1061
effective length of database: 5,029,270
effective search space: 5336055470
effective search space used: 5336055470
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)