Miyakogusa Predicted Gene

chr5.CM0357.270.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr5.CM0357.270.nc - phase: 0 
         (753 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC002956A_C04 KMC002956A_c04                                         563   e-161

>KMC002956A_C04 KMC002956A_c04
          Length = 604

 Score =  563 bits (284), Expect = e-161
 Identities = 316/323 (97%), Gaps = 4/323 (1%)
 Strand = Plus / Minus

                                                                       
Query: 435 ttcttctgatgatgatggaagtgttcccttcttctggggaactgatgcggatggaaacct 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ttcttctgatgatgatggaagtgttcccttcttctggggaactgatgcggatggaaacct 545

                                                                       
Query: 495 tgttctttcagatgagactgagattgttgctaaaagctgtgggaaatcctctgcaccgtt 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tgttctttcagatgagactgagattgttgctaaaagctgtgggaaatcctctgcaccgtt 485

                                                                       
Query: 555 tcctaaaggatgtttcttttcaacatctggaggtttgagcagttttgagcatccactaaa 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcctaaaggatgtttcttttcaacatctggaggtttgagcagttttgagcatccactaaa 425

                                                                       
Query: 615 tgagatgaaggctgtacctagggttgacagttctggagagatgtgtggtgccactttcaa 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgagatgaaggctgtacctagggttgacagttctggagagatgtgtggtgccactttcaa 365

                                                                       
Query: 675 ggtggatgctgatgctaagaaggaaacaactgg-catgccaagg--gttggga-gtgctg 730
           ||||||||||||||||||||||||||||||||| |||||| |||    ||||| ||||||
Sbjct: 364 ggtggatgctgatgctaagaaggaaacaactggccatgcccaggcctctgggaggtgctg 305

                                  
Query: 731 ctaactggtctaataatatctaa 753
           |||||||||||||||||||||||
Sbjct: 304 ctaactggtctaataatatctaa 282


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3016
Number of Sequences: 8469
Number of extensions: 3016
Number of successful extensions: 827
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 2
length of query: 753
length of database: 5,164,774
effective HSP length: 16
effective length of query: 737
effective length of database: 5,029,270
effective search space: 3706571990
effective search space used: 3706571990
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)