Miyakogusa Predicted Gene

chr5.CM0345.1450.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr5.CM0345.1450.nc - phase: 1 /partial
         (1856 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC000792A_C01 KMC000792A_c01                                         379   e-105

>KMC000792A_C01 KMC000792A_c01
          Length = 677

 Score =  379 bits (191), Expect = e-105
 Identities = 197/199 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1658 tcataggtgcttctcaggcactgttgactacatatggcgatctgaaggtctgcaaaccac 1717
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677  tcataggtgcttctcaggcactgttgactacatatggcgatctgaaggtctgcaaaccac 618

                                                                        
Query: 1718 cagagttcttgctccaatacctaaacatgtcatggaatggactccagggttccctacaaa 1777
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 617  cagagttcttgctccgatacctaaacatgtcatggaatggactccagggttccctaccaa 558

                                                                        
Query: 1778 gaaatggggtagtgatcatattgccttggtatccgagttggctttcttgaaagagggtag 1837
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557  gaaatggggtagtgatcatattgccttggtatccgagttggctttcttgaaagagggtag 498

                               
Query: 1838 cgacatcagcaaggatgtt 1856
            |||||||||||||||||||
Sbjct: 497  cgacatcagcaaggatgtt 479


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6169
Number of Sequences: 8469
Number of extensions: 6169
Number of successful extensions: 1655
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1654
Number of HSP's gapped (non-prelim): 1
length of query: 1856
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1839
effective length of database: 5,020,801
effective search space: 9233253039
effective search space used: 9233253039
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)