Miyakogusa Predicted Gene

chr5.CM0260.300.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr5.CM0260.300.nc - phase: 0 /partial
         (957 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC013807A_C01 KMC013807A_c01                                         394   e-110

>KMC013807A_C01 KMC013807A_c01
          Length = 521

 Score =  394 bits (199), Expect = e-110
 Identities = 244/259 (94%)
 Strand = Plus / Minus

                                                                       
Query: 693 accttctgctccggcccaaggtacaccttcaccttctgcttcagcccgagatactgactt 752
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 accttctgctccggccccaggtacaccttcaccttctgcttcagcccgagatactgactt 462

                                                                       
Query: 753 tttaaagccagagacagatgaacagccaaaatcatcttcagtttcagcaggtcaggtatt 812
           ||||||||| ||||| |||| || ||| ||||||||||| |||||||| |||| ||||||
Sbjct: 461 tttaaagcccgagaccgatggaccgcccaaatcatcttccgtttcagccggtccggtatt 402

                                                                       
Query: 813 ggaccatgaagctgaattagctaagctggaatctgagtttggaaaggtcagtcatgatta 872
           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 401 ggaccctgaagctgaattagctaagctggaatctgagtttggaaaggtccgtcatgatta 342

                                                                       
Query: 873 ctctacagaggaaattggtgattgggaatttgatgagcttgaaagagaattggattctgg 932
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctctaccgaggaaattggtgattgggaatttgatgagcttgaaagagaattggattctgg 282

                              
Query: 933 caattcagcaacaagtagc 951
           | ||||||| || ||||||
Sbjct: 281 ccattcagccaccagtagc 263


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4146
Number of Sequences: 8469
Number of extensions: 4146
Number of successful extensions: 1170
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1168
Number of HSP's gapped (non-prelim): 2
length of query: 957
length of database: 5,164,774
effective HSP length: 16
effective length of query: 941
effective length of database: 5,029,270
effective search space: 4732543070
effective search space used: 4732543070
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)