Miyakogusa Predicted Gene
- chr5.CM0200.1570.nc
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.CM0200.1570.nc - phase: 0
(1854 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC005047A_C01 KMC005047A_c01 831 0.0
KMC005584A_C01 KMC005584A_c01 731 0.0
KMC000696A_C01 KMC000696A_c01 66 1e-10
>KMC005047A_C01 KMC005047A_c01
Length = 621
Score = 831 bits (419), Expect = 0.0
Identities = 419/419 (100%)
Strand = Plus / Minus
Query: 1436 gtccaagtaacagtcctgccccagttgaagtgagccctgctgcaccaaatgcgagcaaag 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccaagtaacagtcctgccccagttgaagtgagccctgctgcaccaaatgcgagcaaag 562
Query: 1496 agtcagagggtgctgagaaagatgatgtgttttcagatggtgaggctgagcatcctgctt 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtcagagggtgctgagaaagatgatgtgttttcagatggtgaggctgagcatcctgctt 502
Query: 1556 cttcaagaagtaagcaaacaaaagcatctgaagcagttgaaacagttacgaatgcgccca 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttcaagaagtaagcaaacaaaagcatctgaagcagttgaaacagttacgaatgcgccca 442
Query: 1616 gagagtctgagtcaaacaaaaattcagaccaagtctcaaatttaacgcgtgcaacagaac 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagagtctgagtcaaacaaaaattcagaccaagtctcaaatttaacgcgtgcaacagaac 382
Query: 1676 aagtttctttgggaaataagatctctacgccaattcacagtgctggtgagccaaaaagtg 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtttctttgggaaataagatctctacgccaattcacagtgctggtgagccaaaaagtg 322
Query: 1736 atgatggaagaacagtgcccagtctcccgacgcccagctcggaaagtgagtttaaggcca 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgatggaagaacagtgcccagtctcccgacgcccagctcggaaagtgagtttaaggcca 262
Query: 1796 tggctgcagatgcttctgtctttacgttcggagatgatgaagactacgaaagtgactga 1854
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggctgcagatgcttctgtctttacgttcggagatgatgaagactacgaaagtgactga 203
>KMC005584A_C01 KMC005584A_c01
Length = 540
Score = 731 bits (369), Expect = 0.0
Identities = 378/381 (99%)
Strand = Plus / Plus
Query: 1 atggattcggtacctgctgatgtgtctaattcatctcctgcgaaagttccatctacttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 atggattcggtacctgctgatgtgtctaattcatctcctgcgaaagttccatctacttcg 219
Query: 61 cctcctgccaaagagaccggtggagaagcttctgcttctgtagcctctggagaagataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 cctcctgccaaagagaccggtggagaagcttctgcttctgtagcctctggagaagataat 279
Query: 121 tctgccggcgaggcaccatctaggctatctcccactggcatatcatcttgggccaaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tctgccggcgaggcaccatctaggctatctcccactggcatatcatcttgggccaaaaac 339
Query: 181 ttgaaaatttctccatcattttccggctcccaagatgactcatcaagtgcaaatgctggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttgaaaatttctccatcattttccggctcccaagatgactcatcaagtgcaaatgctggg 399
Query: 241 aaatcatctttcgcacgcttcactagtaatttgggattgcggttgtctccaaaatctcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aaatcatctttcgcacgcttcactagtaatttgggattgcggttgtctccaaaatctcct 459
Query: 301 gcaacagatgacagaaccaatgaaacaacatcgcagtctaatttgttgggaaatattaca 360
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 460 gcaacagatgacagaaccaatgaaacaacatcgcagtctaatgggtcgggaaatattaca 519
Query: 361 aaaggcttggttgactcttcg 381
|||||||||||||||||||||
Sbjct: 520 aaaggcttggttgactcttcg 540
>KMC000696A_C01 KMC000696A_c01
Length = 531
Score = 65.9 bits (33), Expect = 1e-10
Identities = 76/89 (85%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 1148 gtgcaccaaagaagggagtgatggtctttgctttgcctggagagcctggtcttacagagt 1207
||||||| ||||||| ||||||||||||||||||| | ||||| |||||||| ||||||
Sbjct: 267 gtgcacccaagaaggaagtgatggtctttgctttg-attgagagactggtcttgcagagt 209
Query: 1208 tggctggtgacttcaaaatccattttcac 1236
||| | | ||| || |||||| |||||||
Sbjct: 208 tggttagggacatccaaatcctttttcac 180
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7214
Number of Sequences: 8469
Number of extensions: 7214
Number of successful extensions: 1945
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1940
Number of HSP's gapped (non-prelim): 5
length of query: 1854
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1837
effective length of database: 5,020,801
effective search space: 9223211437
effective search space used: 9223211437
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)