Miyakogusa Predicted Gene

chr5.CM0200.1250.nc

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr5.CM0200.1250.nc + phase: 0 
         (774 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC021196A_C01 KMC021196A_c01                                        1516   0.0  

>KMC021196A_C01 KMC021196A_c01
          Length = 997

 Score = 1516 bits (765), Expect = 0.0
 Identities = 765/765 (100%)
 Strand = Plus / Minus

                                                                       
Query: 10  gccacacatgcagatccaaacgagcatccacccaaaaccaaacgacagatcttcattctc 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 997 gccacacatgcagatccaaacgagcatccacccaaaaccaaacgacagatcttcattctc 938

                                                                       
Query: 70  tccggccaaagcaacatggccggacgaggcggcgtgattaagaacccccaccaccaccca 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 937 tccggccaaagcaacatggccggacgaggcggcgtgattaagaacccccaccaccaccca 878

                                                                       
Query: 130 aacaagcgctgggacggcgtcgttccaccggagtgccaccctgacccttccatcctccgc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 aacaagcgctgggacggcgtcgttccaccggagtgccaccctgacccttccatcctccgc 818

                                                                       
Query: 190 ctcagcgccgccctccgatgggagccagctcacgagcctctccacaccgacatcgacact 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ctcagcgccgccctccgatgggagccagctcacgagcctctccacaccgacatcgacact 758

                                                                       
Query: 250 aagaaagtctgcggcgtgggtcccggcatgtgcttcgccaacgcggtgcggcggcgcgtg 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aagaaagtctgcggcgtgggtcccggcatgtgcttcgccaacgcggtgcggcggcgcgtg 698

                                                                       
Query: 310 ggcggcgagttcggccttgtcccgtgtgccgtgggtggcacccccatgaaggagtgggcg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ggcggcgagttcggccttgtcccgtgtgccgtgggtggcacccccatgaaggagtgggcg 638

                                                                       
Query: 370 cgtggggaggagttgtatgaaaacatggtgaagagagccaaattcagcgtgaccggcgac 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cgtggggaggagttgtatgaaaacatggtgaagagagccaaattcagcgtgaccggcgac 578

                                                                       
Query: 430 cacggtggcgagatcaaagcattgctgtggttccagggagagagtgacacttccagtgag 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cacggtggcgagatcaaagcattgctgtggttccagggagagagtgacacttccagtgag 518

                                                                       
Query: 490 catgatgcagaggcttacaaggtcaacatggaaacgctcatccacaatgttcgtcaagac 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 catgatgcagaggcttacaaggtcaacatggaaacgctcatccacaatgttcgtcaagac 458

                                                                       
Query: 550 ctcaatcttccatctcttcccatcattcaggttgcaatagcctcagggtttgagtacatg 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctcaatcttccatctcttcccatcattcaggttgcaatagcctcagggtttgagtacatg 398

                                                                       
Query: 610 gagaaagtgagggaagcacaaaaagggattgaacttccaaatgtgatttgcgtggatgca 669
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gagaaagtgagggaagcacaaaaagggattgaacttccaaatgtgatttgcgtggatgca 338

                                                                       
Query: 670 aagggatttcagttgaaggaagataatcttcatcttaccttggaggctcaagttaagttg 729
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 aagggatttcagttgaaggaagataatcttcatcttaccttggaggctcaagttaagttg 278

                                                        
Query: 730 ggtcacatgctggctgaggcctatcttacccattttgttgcatga 774
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ggtcacatgctggctgaggcctatcttacccattttgttgcatga 233


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2533
Number of Sequences: 8469
Number of extensions: 2533
Number of successful extensions: 667
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 2
length of query: 774
length of database: 5,164,774
effective HSP length: 16
effective length of query: 758
effective length of database: 5,029,270
effective search space: 3812186660
effective search space used: 3812186660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)