Miyakogusa Predicted Gene
- chr5.CM0148.500.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.CM0148.500.nd - phase: 0
(468 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC005299A_C01 KMC005299A_c01 630 0.0
KMC008197A_C01 KMC008197A_c01 228 4e-60
>KMC005299A_C01 KMC005299A_c01
Length = 572
Score = 630 bits (318), Expect = 0.0
Identities = 318/318 (100%)
Strand = Plus / Minus
Query: 151 tatgctttatttgctggcaaggatgctagcagagctttagcaaagatgtcttttgaagag 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tatgctttatttgctggcaaggatgctagcagagctttagcaaagatgtcttttgaagag 513
Query: 211 aaagatctcactggggatatttctggtcttggcccatttgagctcgaggccttacaggac 270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 aaagatctcactggggatatttctggtcttggcccatttgagctcgaggccttacaggac 453
Query: 271 tgggaatacaaattttcagagaagtatgtaaaagttggaactgtcaaatcaaatgttccg 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgggaatacaaattttcagagaagtatgtaaaagttggaactgtcaaatcaaatgttccg 393
Query: 331 gtgtctgaaacagaatcaactggcgaaccatcagagtctactccccgtgatgttgatgct 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtgtctgaaacagaatcaactggcgaaccatcagagtctactccccgtgatgttgatgct 333
Query: 391 gctaagcctgctgaaaatggcccatcagaaactgctgctgttaaaagcgatgaaaatgtt 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gctaagcctgctgaaaatggcccatcagaaactgctgctgttaaaagcgatgaaaatgtt 273
Query: 451 gatgtcaataaagattaa 468
||||||||||||||||||
Sbjct: 272 gatgtcaataaagattaa 255
>KMC008197A_C01 KMC008197A_c01
Length = 1020
Score = 228 bits (115), Expect = 4e-60
Identities = 180/198 (90%), Gaps = 4/198 (2%)
Strand = Plus / Minus
Query: 123 caggatgttttatggacccggtggaccttatgctttatttgctggcaaggatgctagcag 182
|||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct: 887 caggatgttttacggacccggtggaccttatgctctatttgccggcaaggatgctagccg 828
Query: 183 agctttagcaaagatgtcttttgaagagaaagatctcactggggatatttctggtcttgg 242
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 827 agctttagcaaagatgtcttttgaagagaaagatctaactggggatatctctggtcttgg 768
Query: 243 cccatttgagctcgaggccttacaggactgggaatacaaattttca-gag-aagtatgta 300
| |||||||||| || ||||| || ||||||||||| || |||| ||| |||||||||
Sbjct: 767 ctcatttgagcttgatgccttgcaagactgggaatataa--gttcatgagcaagtatgta 710
Query: 301 aaagttggaactgtcaaa 318
|||||||||||| |||||
Sbjct: 709 aaagttggaactatcaaa 692
Score = 63.9 bits (32), Expect = 1e-10
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 378 tgatgttgatgctgctaagcctgctgaaaatggcccatcagaaactgctgctgttaaaag 437
||||| ||||||| | || ||| ||||||||||||| |||||||||| |||||||||||
Sbjct: 611 tgatgatgatgcttccaaacctactgaaaatggcccttcagaaactgaagctgttaaaag 552
Query: 438 cgatgaaa 445
|||||||
Sbjct: 551 tgatgaaa 544
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2001
Number of Sequences: 8469
Number of extensions: 2001
Number of successful extensions: 579
Number of sequences better than 1.0e-03: 2
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 5
length of query: 468
length of database: 5,164,774
effective HSP length: 16
effective length of query: 452
effective length of database: 5,029,270
effective search space: 2273230040
effective search space used: 2273230040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)