Miyakogusa Predicted Gene
- chr5.CM0052.430.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.CM0052.430.nd + phase: 0 /partial
(621 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC002167A_C01 KMC002167A_c01 599 e-171
KMC003751A_C01 KMC003751A_c01 172 3e-43
KMC003823A_C02 KMC003823A_c02 56 4e-08
>KMC002167A_C01 KMC002167A_c01
Length = 563
Score = 599 bits (302), Expect = e-171
Identities = 302/302 (100%)
Strand = Plus / Minus
Query: 320 gcagccccaacacgttcgacaacaagtactacgtcgacctcatgaaccgccagggtctct 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcagccccaacacgttcgacaacaagtactacgtcgacctcatgaaccgccagggtctct 504
Query: 380 tcttctccgaccaggacttgtacactgacaagaggaccaaggacattgttaccagctttg 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcttctccgaccaggacttgtacactgacaagaggaccaaggacattgttaccagctttg 444
Query: 440 cagtgaaccagagtttgtttttcgagaagtttgtggtggcgatgctaaagatggggcagc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagtgaaccagagtttgtttttcgagaagtttgtggtggcgatgctaaagatggggcagc 384
Query: 500 tgaacgtgttgacagggagtcaaggggagattcgtgctaattgctctgtgaggaatgcgg 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgaacgtgttgacagggagtcaaggggagattcgtgctaattgctctgtgaggaatgcgg 324
Query: 560 ataagaagaagagtttcttgactactgtggtggaagaagtggtggaagagttgatagaaa 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataagaagaagagtttcttgactactgtggtggaagaagtggtggaagagttgatagaaa 264
Query: 620 tg 621
||
Sbjct: 263 tg 262
>KMC003751A_C01 KMC003751A_c01
Length = 551
Score = 172 bits (87), Expect = 3e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 tcagggggaccagactatgaactccccttaggaaggagagatggattaaacttcgccaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcagggggaccagactatgaactccccttaggaaggagagatggattaaacttcgccaca 524
Query: 61 aggaatgtcaccttggataacctccca 87
|||||||||||||||||||||||||||
Sbjct: 525 aggaatgtcaccttggataacctccca 551
>KMC003823A_C02 KMC003823A_c02
Length = 757
Score = 56.0 bits (28), Expect = 4e-08
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 340 aacaagtactacgtcgacctcatgaaccgcca 371
|||||||||||| |||||||||||||||||||
Sbjct: 530 aacaagtactacctcgacctcatgaaccgcca 499
Score = 48.1 bits (24), Expect = 1e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 436 tttgcagtgaaccagagtttgtttttcgagaagtttgtgg 475
||||||||||| |||| |||||||| |||||||||||||
Sbjct: 434 tttgcagtgaatcagacattgttttttgagaagtttgtgg 395
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2045
Number of Sequences: 8469
Number of extensions: 2045
Number of successful extensions: 530
Number of sequences better than 1.0e-03: 3
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 5
length of query: 621
length of database: 5,164,774
effective HSP length: 16
effective length of query: 605
effective length of database: 5,029,270
effective search space: 3042708350
effective search space used: 3042708350
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)