Miyakogusa Predicted Gene
- chr5.CM0052.230.nd
BLASTN 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= chr5.CM0052.230.nd + phase: 0
(1326 letters)
Database: lotus_consensus
8469 sequences; 5,164,774 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KMC008264A_C01 KMC008264A_c01 660 0.0
>KMC008264A_C01 KMC008264A_c01
Length = 557
Score = 660 bits (333), Expect = 0.0
Identities = 354/357 (99%), Gaps = 3/357 (0%)
Strand = Plus / Minus
Query: 973 ttctccaagcatgctaccataacccaaggtgctgatacgcacgagtactcaaattcaaat 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttctccaagcatgctaccataacccaaggtgctgatacgcacgagtactcaaattcaaat 498
Query: 1033 ctcaatcgtttcaatcgcaatgctgctaaaaactaccgctactgttgctccccaacgaga 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ctcaatcgtttcaatcgcaatgctgctaaaaactaccgctactgttgctccccaacgaga 438
Query: 1093 atgatccatttatccacactccctcaagacgtcactgaggaggagattgcgagccttgtt 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgatccatttatccacactccctcaagacgtcactgaggaggagattgcgagccttgtt 378
Query: 1153 gaggagcacggaaccattgtcaactgcaaagtg-tttgagatgaatcagaagaaacaggc 1211
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 377 gaggagcacggaaccattgtcaactgcaaagtgctttgagatgaatcagaagaaacaggc 318
Query: 1212 tctggttcagtttgagactgaggagcaggctactgaagccctcgtgtgcaagcatgcca- 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctggttcagtttgagactgaggagcaggctactgaagccctcgtgtgcaagcatgccac 258
Query: 1271 cctcg-ctttctggctcagtgatccggatctccttttcccagttacagaacatttga 1326
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cctcgcctttctggctcagtgatccggatctccttttcccagttacagaacatttga 201
Database: lotus_consensus
Posted date: Nov 10, 2006 2:59 PM
Number of letters in database: 5,164,774
Number of sequences in database: 8469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4171
Number of Sequences: 8469
Number of extensions: 4171
Number of successful extensions: 1089
Number of sequences better than 1.0e-03: 1
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1086
Number of HSP's gapped (non-prelim): 1
length of query: 1326
length of database: 5,164,774
effective HSP length: 17
effective length of query: 1309
effective length of database: 5,020,801
effective search space: 6572228509
effective search space used: 6572228509
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)