Miyakogusa Predicted Gene

chr4.LjT32J05.120.nc
Show Alignment:  

BLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= chr4.LjT32J05.120.nc + phase: 0 
         (882 letters)

Database: lotus_consensus 
           8469 sequences; 5,164,774 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KMC001027A_C01 KMC001027A_c01                                         517   e-147

>KMC001027A_C01 KMC001027A_c01
          Length = 610

 Score =  517 bits (261), Expect = e-147
 Identities = 267/269 (99%)
 Strand = Plus / Minus

                                                                       
Query: 517 aggggtagggatgattattattctcctgagcgatcaagatcttattctaggtctcgctct 576
           |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 593 agggttagggatgattattattctcctgagcgatcaagatcttattctagttctcgctct 534

                                                                       
Query: 577 cctagtggcggaaaggactacagaaggtcccctcatcccagggagaatggtcggagtcct 636
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 cctagtggcggaaaggactacagaaggtcccctcatcccagggagaatggtcggagtcct 474

                                                                       
Query: 637 aatgacaagagggatcagtcacctagcagatctctgagtcccagacgtgatgatccttct 696
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aatgacaagagggatcagtcacctagcagatctctgagtcccagacgtgatgatccttct 414

                                                                       
Query: 697 aatgaaaagagggatcgggcacctaacagatctgtgagtcctagacgcgatgatcgcagt 756
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aatgaaaagagggatcgggcacctaacagatctgtgagtcctagacgcgatgatcgcagt 354

                                        
Query: 757 ccttcaaggtcccgttcgcggtcatacag 785
           |||||||||||||||||||||||||||||
Sbjct: 353 ccttcaaggtcccgttcgcggtcatacag 325


  Database: lotus_consensus
    Posted date:  Nov 10, 2006  2:59 PM
  Number of letters in database: 5,164,774
  Number of sequences in database:  8469
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2244
Number of Sequences: 8469
Number of extensions: 2244
Number of successful extensions: 594
Number of sequences better than 1.0e-03: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 2
length of query: 882
length of database: 5,164,774
effective HSP length: 16
effective length of query: 866
effective length of database: 5,029,270
effective search space: 4355347820
effective search space used: 4355347820
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)